The SUPERFAMILY database in 2004: additions and improvements. - Martin Madera; Christine Vogel; Sarah K. Kummerfeld; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2004)

Protein Family Expansions and Biological Complexity. - Christine Vogel; Cyrus Chothia (PLoS Comput. Biol., 2006)

The SUPERFAMILY database in 2007: families and functions. - Derek Wilson; Martin Madera; Christine Vogel; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2007)

The (In)dependence of Alternative Splicing and Gene Duplication. - David Talavera; Christine Vogel; Modesto Orozco; Sarah A. Teichmann; Xavier de la Cruz (PLoS Comput. Biol., 2007)

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results. - John C. Braisted; Srilatha Kuntumalla; Christine Vogel; Edward M. Marcotte; Alan R. Rodrigues; Rong Wang; Shih-Ting Huang; Erik S. Ferlanti; Alexander I. Saeed; Robert D. Fleischmann; Scott N. Peterson; Rembert Pieper (BMC Bioinform., 2008)

Mining gene functional networks to improve mass-spectrometry-based protein identification. - Smriti R. Ramakrishnan; Christine Vogel; Taejoon Kwon; Luiz O. F. Penalva; Edward M. Marcotte; Daniel P. Miranker (Bioinform., 2009)

Integrating shotgun proteomics and mRNA expression data to improve protein identification. - Smriti R. Ramakrishnan; Christine Vogel; John T. Prince; Rong Wang; Zhihua Li; Luiz O. F. Penalva; Margaret Myers; Edward M. Marcotte; Daniel P. Miranker (Bioinform., 2009)

SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny. - Derek Wilson; Ralph Pethica; Yiduo Zhou; Charles Talbot; Christine Vogel; Martin Madera; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2009)

Label-Free Protein Quantitation Using Weighted Spectral Counting. - Christine Vogel; Edward M. Marcotte (Quantitative Methods in Proteomics, 2012)

Systems Approaches to the Eukaryotic Stress Response. - Christine Vogel (PLoS Comput. Biol., 2016)