Accelerating the reconstruction of genome-scale metabolic networks. - Richard A. Notebaart; Frank H. J. van Enckevort; Christof Francke; Roland J. Siezen; Bas Teusink (BMC Bioinform., 2006)

LocateP: Genome-scale subcellular-location predictor for bacterial proteins. - Miaomiao Zhou; Jos Boekhorst; Christof Francke; Roland J. Siezen (BMC Bioinform., 2008)

COMBat: Visualizing co-occurrence of annotation terms. - Remko B. J. van Brakel; Mark W. E. J. Fiers; Christof Francke; Michel A. Westenberg; Huub van de Wetering (BioVis, 2013)

CiVi: circular genome visualization with unique features to analyze sequence elements. - Lex Overmars; Sacha A. F. T. van Hijum; Roland J. Siezen; Christof Francke (Bioinform., 2015)