Multi-criterial coding sequence prediction. Combination of GeneMark with two novel, coding-character specific quantities. - Yannis Almirantis; Christoforos Nikolaou (Comput. Biol. Medicine, 2005)

Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signatures. - Dimitris Polychronopoulos; Anastasia Krithara; Christoforos Nikolaou; Georgios Paliouras; Yannis Almirantis; George Giannakopoulos (AlCoB, 2014)

Menzerath-Altmann law in mammalian exons reflects the dynamics of gene structure evolution. - Christoforos Nikolaou (Comput. Biol. Chem., 2014)

Orphan and gene related CpG Islands follow power-law-like distributions in several genomes: Evidence of function-related and taxonomy-related modes of distribution. - Giannis Tsiagkas; Christoforos Nikolaou; Yannis Almirantis (Comput. Biol. Chem., 2014)

Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis. - Panagiotis Chouvardas; George Kollias; Christoforos Nikolaou (BMC Bioinform., 2016)

ECCB 2018: The 17th European Conference on Computational Biology. - Artemis G. Hatzigeorgiou; Pantelis G. Bagos; Panayiotis V. Benos; Christoforos Nikolaou; Yves Moreau; Ioannis Kavakiotis (Bioinform., 2018)

An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis. - Niki Karagianni; Ksanthi Kranidioti; Nikolaos Fikas; Maria Tsochatzidou; Panagiotis Chouvardas; Maria C. Denis; George Kollias; Christoforos Nikolaou (PLoS Comput. Biol., 2019)

SEGCOND predicts putative transcriptional condensate-associated genomic regions by integrating multi-omics data. - Antonios Klonizakis; Christoforos Nikolaou; Thomas Graf (Bioinform., 2023)