GECKO: a complete large-scale gene expression analysis platform. - Joachim Theilhaber; Anatoly Ulyanov; Anish Malanthara; Jack Cole; Dapeng Xu; Robert Nahf; Michael Heuer; Christoph Brockel; Steven Bushnell (BMC Bioinform., 2004)

Network-Driven Analysis Methods and their Application to Drug Discovery. - Daniel Ziemek; Christoph Brockel (Handbook of Research on Computational and Systems Biology, 2011)

Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (RECOMB, 2011)

Causal reasoning on biological networks: interpreting transcriptional changes. - Leonid Chindelevitch; Daniel Ziemek; Ahmed Enayetallah; Ranjit Randhawa; Ben Sidders; Christoph Brockel; Enoch S. Huang (Bioinform., 2012)

A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease. - Lichy Han; Mateusz Maciejewski; Christoph Brockel; William Gordon; Scott B. Snapper; Joshua R. Korzenik; Lovisa Afzelius; Russ B. Altman (Bioinform., 2018)