Atomic patch similarity as a criterion of evolutionary relationship between proteins. - Christoph Gille; Andrean Goede; Robert Preissner; Cornelius Frömmel (German Conference on Bioinformatics, 1998)

Interfaces of Secondary Structural Elements in Proteins - Evolution of Atomic Substructures -. - Christoph Gille; Andrean Goede; Kristian Rother; Robert Preissner; Cornelius Frömmel (German Conference on Bioinformatics, 1999)

STRAP: editor for STRuctural Alignments of Proteins. - Christoph Gille; Cornelius Frömmel (Bioinform., 2001)

Oligodb-interactive design of oligo DNA for transcription profiling of human genes. - Ralf Mrowka; Johannes Schuchhardt; Christoph Gille (Bioinform., 2002)

Accelerating screening of 3D protein data with a graph theoretical approach. - Cornelius Frömmel; Christoph Gille; Andrean Goede; Clemens Gröpl; Stefan Hougardy; Till Nierhoff; Robert Preissner; Martin Thimm (Bioinform., 2003)

KISS for STRAP: user extensions for a protein alignment editor. - Christoph Gille; Stephan Lorenzen; Elke Michalsky; Cornelius Frömmel (Bioinform., 2003)

Online tool for the discrimination of equi-distributions. - Thorsten Pöschel; Cornelius Frömmel; Christoph Gille (BMC Bioinform., 2003)

HotSwap for bioinformatics: A STRAP tutorial. - Christoph Gille; Peter N. Robinson (BMC Bioinform., 2006)

METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks. - Christoph Gille; Sabrina Hoffmann; Hermann-Georg Holzhütter (BMC Syst. Biol., 2007)

Superimposé: a 3D structural superposition server. - Raphael A. Bauer; Philip E. Bourne; Arno Formella; Cornelius Frömmel; Christoph Gille; Andrean Goede; Aysam Guerler; Andreas Hoppe; Ernst-Walter Knapp; Thorsten Pöschel; Burghardt Wittig; Valentin Ziegler; et al. (Nucleic Acids Res., 2008)

Metannogen: annotation of biological reaction networks. - Christoph Gille; Katrin Hübner; Andreas Hoppe; Hermann-Georg Holzhütter (Bioinform., 2011)

FASIMU: flexible software for flux-balance computation series in large metabolic networks. - Andreas Hoppe; Sabrina Hoffmann; Andreas Gerasch; Christoph Gille; Hermann-Georg Holzhütter (BMC Bioinform., 2011)

Sequence alignment visualization in HTML5 without Java. - Christoph Gille; Birgit Weyand; Andreas Gille (Bioinform., 2014)

Alignment-Annotator web server: rendering and annotating sequence alignments. - Christoph Gille; Michael Fähling; Birgit Weyand; Thomas Wieland; Andreas Gille (Nucleic Acids Res., 2014)