Inferring differentiation pathways from gene expression. - Ivan G. Costa; Stefan Roepcke; Christoph Hafemeister; Alexander Schliep (ISMB, 2008)

Constrained mixture estimation for analysis and robust classification of clinical time series. - Ivan G. Costa; Alexander Schönhuth; Christoph Hafemeister; Alexander Schliep (Bioinform., 2009)

Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. - Christoph Hafemeister; Ivan G. Costa; Alexander Schönhuth; Alexander Schliep (Bioinform., 2011)

Selecting Oligonucleotide Probes for Whole-Genome Tiling Arrays with a Cross-Hybridization Potential. - Christoph Hafemeister; Roland Krause; Alexander Schliep (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks. - Alex Greenfield; Christoph Hafemeister; Richard Bonneau (Bioinform., 2013)

Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks. - Bowen Yu 004; Harish Doraiswamy; Xi Chen; Emily R. Miraldi; Mario Luis Arrieta-Ortiz; Christoph Hafemeister; Aviv Madar; Richard Bonneau; Cláudio T. Silva (IEEE Trans. Vis. Comput. Graph., 2014)

Inter-species pathway perturbation prediction via data-driven detection of functional homology. - Christoph Hafemeister; Roberto Romero; Erhan Bilal; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Richard Bonneau; Adi L. Tarca (Bioinform., 2015)

Developmental diversification of cortical inhibitory interneurons. - Christian Mayer; Christoph Hafemeister; Rachel C. Bandler; Robert Machold; Renata Batista Brito; Xavier Jaglin; Kathryn Allaway; Andrew Butler; Gord Fishell; Rahul Satija (Nat., 2018)