Simulation approaches to soft matter: Generic statistical properties vs. chemical details. - Matej Praprotnik; Christoph Junghans; Luigi Delle Site; Kurt Kremer (Comput. Phys. Commun., 2008)

A reference implementation of the adaptive resolution scheme in ESPResSo. - Christoph Junghans; Simón Poblete (Comput. Phys. Commun., 2010)

Hierarchies in nucleation transitions. - Christoph Junghans; Wolfhard Janke; Michael Bachmann (Comput. Phys. Commun., 2011)

Spatial adaptive sampling in multiscale simulation. - Bertrand Rouet-Leduc; Kipton Barros; Emmanuel Cieren; Venmugil Elango; Christoph Junghans; Turab Lookman; Jamaludin Mohd-Yusof; Robert S. Pavel; Axel Y. Rivera; Dominic Roehm; Allen L. McPherson; Timothy C. Germann (Comput. Phys. Commun., 2014)

Database assisted distribution to improve fault tolerance for multiphysics applications. - Robert S. Pavel; Allen L. McPherson; Timothy C. Germann; Christoph Junghans (Co-HPC@SC, 2015)

Distributed Database Kriging for Adaptive Sampling (D2KAS). - Dominic Roehm; Robert S. Pavel; Kipton Barros; Bertrand Rouet-Leduc; Allen L. McPherson; Timothy C. Germann; Christoph Junghans (Comput. Phys. Commun., 2015)

STOCK: Structure mapper and online coarse-graining kit for molecular simulations. - Stas Bevc; Christoph Junghans; Matej Praprotnik (J. Comput. Chem., 2015)

TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics. - Susan M. Mniszewski; Christoph Junghans; Arthur F. Voter; Danny Perez; Stephan J. Eidenbenz (ACM Trans. Model. Comput. Simul., 2015)

Accommodating Thread-Level Heterogeneity in Coupled Parallel Applications. - Samuel K. Gutierrez; Kei Davis; Dorian C. Arnold; Randal S. Baker; Robert W. Robey; Patrick S. McCormick; Daniel Holladay; Jon A. Dahl; R. Joe Zerr; Florian Weik; Christoph Junghans (IPDPS, 2017)

Computational efficiency and Amdahl's law for the adaptive resolution simulation technique. - Christoph Junghans; Animesh Agarwal; Luigi Delle Site (Comput. Phys. Commun., 2017)

ESPResSo++ 2.0: Advanced methods for multiscale molecular simulation. - Horacio V. Guzman; Nikita Tretyakov; Hideki Kobayashi; Aoife C. Fogarty; Karsten Kreis; Jakub Krajniak; Christoph Junghans; Kurt Kremer; Torsten Stuehn (Comput. Phys. Commun., 2019)

Asynchronous distributed-memory task-parallel algorithm for compressible flows on unstructured 3D Eulerian grids. - József Bakosi; Robert F. Bird; F. Gonzalez; Christoph Junghans; Weizhao Li; Hong Luo; Aditya K. Pandare; Jacob Waltz (Adv. Eng. Softw., 2021)

Enabling particle applications for exascale computing platforms. - Susan M. Mniszewski; James F. Belak; Jean-Luc Fattebert; Christian F. A. Negre; Stuart R. Slattery; Adetokunbo A. Adedoyin; Robert F. Bird; Choong-Seock Chang; Guangye Chen; Stéphane Ethier; Shane Fogerty; Salman Habib 002; et al. (Int. J. High Perform. Comput. Appl., 2021)

Kokkos-Based Implementation of MPCD on Heterogeneous Nodes. - Rene Halver; Christoph Junghans; Godehard Sutmann (PPAM (2), 2022)

Predictive Scale-Bridging Simulations through Active Learning. - Satish Karra; Mohammed Mehana; Nicholas Lubbers; Yu Chen; Abdourahmane Diaw; Javier E. Santos; Aleksandra Pachalieva; Robert S. Pavel; Jeffrey R. Haack; Michael M. McKerns; Christoph Junghans; Qinjun Kang; et al. (CoRR, 2022)

Cabana: A Performance Portable Library for Particle-Based Simulations. - Stuart R. Slattery; Samuel Temple Reeve; Christoph Junghans; Damien Lebrun-Grandié; Robert F. Bird; Guangye Chen; Shane Fogerty; Yuxing Qiu; Stephan Schulz 006; Aaron Scheinberg; Austin Isner; Kwitae Chong; et al. (J. Open Source Softw., 2022)

GLUE Code: A framework handling communication and interfaces between scales. - Aleksandra Pachalieva; Robert S. Pavel; Javier E. Santos; Abdourahmane Diaw; Nicholas Lubbers; Mohammed Mehana; Jeffrey R. Haack; Hari S. Viswanathan; Daniel Livescu; Timothy C. Germann; Christoph Junghans (J. Open Source Softw., 2022)

Code modernization strategies for short-range non-bonded molecular dynamics simulations. - James Vance; Zhen-Hao Xu; Nikita Tretyakov; Torsten Stuehn; Markus Rampp; Sebastian Eibl; Christoph Junghans; André Brinkmann (Comput. Phys. Commun., 2023)

Parthenon - a performance portable block-structured adaptive mesh refinement framework. - Philipp Grete; Joshua C. Dolence; Jonah M. Miller; Joshua Brown 006; Ben Ryan; Andrew Gaspar; Forrest Wolfgang Glines; Sriram Swaminarayan; Jonas Lippuner; Clell J. Solomon; Galen M. Shipman; Christoph Junghans; et al. (Int. J. High Perform. Comput. Appl., 2023)

Using heterogeneous GPU nodes with a Cabana-based implementation of MPCD. - Rene Halver; Christoph Junghans; Godehard Sutmann (Parallel Comput., 2023)

Asynchronous-Many-Task Systems: Challenges and Opportunities - Scaling an AMR Astrophysics Code on Exascale machines using Kokkos and HPX. - Gregor Daiß; Patrick Diehl; Jiakun Yan; John K. Holmen; Rahulkumar Gayatri; Christoph Junghans; Alexander Straub; Jeff R. Hammond; Dominic Marcello; Miwako Tsuji; Dirk Pflüger; Hartmut Kaiser (CoRR, 2024)

Co-design for Particle Applications at Exascale. - Samuel Temple Reeve; Jean-Luc Fattebert; Stephen Dewitt; Pablo Seleson; David Joy; Stuart R. Slattery; Aaron Scheinberg; Rene Halver; Christoph Junghans; Christian F. A. Negre; Michael E. Wall; Yu Zhang 010; et al. (Comput. Sci. Eng., 2024)

VOTCA: multiscale frameworks for quantum and classical simulations in soft matter. - Björn Baumeier; Jens Wehner; Nicolas Renaud; Felipe Zapata 002; Rene Halver; Pranav Madhikar; Ruben Gerritsen; Gianluca Tirimbo; Javier Sijen; David Rosenberger; Joshua S. Brown; Vivek Sundaram; et al. (J. Open Source Softw., 2024)

Singularity-EOS: Performance Portable Equations of State and Mixed Cell Closures. - Jonah M. Miller; Daniel Holladay; Jeffrey H. Peterson; Christopher M. Mauney; Richard Berger; Anna Pietarila Graham; Karen C. Tsai; Brandon Barker; Alexander Holas; Ann E. Mattsson; Mariam Gogilashvili; Joshua C. Dolence; et al. (J. Open Source Softw., 2024)