Integrated network reconstruction, visualization and analysis using YANAsquare. - Roland Schwarz 002; Chunguang Liang; Christoph Kaleta; Mark Kühnel; Eik Hoffmann; Sergei Kuznetsov; Michael Hecker; Gareth Griffiths 003; Stefan Schuster; Thomas Dandekar (BMC Bioinform., 2007)

Chemical organizations in living systems. - Peter Dittrich; Florian Centler; Christoph Kaleta; Naoki Matsumaru; Pietro Speroni di Fenizio (ALIFE, 2008)

Computing chemical organizations in biological networks. - Florian Centler; Christoph Kaleta; Pietro Speroni di Fenizio; Peter Dittrich (Bioinform., 2008)

Phenotype prediction in regulated metabolic networks. - Christoph Kaleta; Florian Centler; Pietro Speroni di Fenizio; Peter Dittrich (BMC Syst. Biol., 2008)

Computing Elementary Flux Modes in Genome-scale Metabolic Networks. - Christoph Kaleta; Luis F. de Figueiredo; Jörn Behre; Stefan Schuster (GCB, 2009)

Computing the shortest elementary flux modes in genome-scale metabolic networks. - Luis F. de Figueiredo; Adam Podhorski; Angel Rubio; Christoph Kaleta; John E. Beasley; Stefan Schuster; Francisco J. Planes (Bioinform., 2009)

Can sugars be produced from fatty acids? A test case for pathway analysis tools. - Luis F. de Figueiredo; Stefan Schuster; Christoph Kaleta; David A. Fell (Bioinform., 2009)

Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. - Luis F. de Figueiredo; Stefan Schuster; Christoph Kaleta; David A. Fell (Bioinform., 2009)

Using chemical organization theory for model checking. - Christoph Kaleta; Stephan Richter 002; Peter Dittrich (Bioinform., 2009)

CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks. - Katrin Bohl; Luis F. de Figueiredo; Oliver Hädicke; Steffen Klamt; Christian Kost; Stefan Schuster; Christoph Kaleta (GCB, 2010)

A parallel algorithm to compute chemical organizations in biological networks. - Florian Centler; Christoph Kaleta; Pietro Speroni di Fenizio; Peter Dittrich (Bioinform., 2010)

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. - Christoph Kaleta; Anna-Katharina Göhler; Stefan Schuster; Knut Jahreis; Reinhard Guthke; Swetlana Nikolajewa (BMC Syst. Biol., 2010)

Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis. - Christoph Kaleta; Luis F. de Figueiredo; Ines Heiland; Steffen Klamt; Stefan Schuster (Biosyst., 2011)

Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach. - Stefan Schuster; Luis F. de Figueiredo; Anja Schröter; Christoph Kaleta (Biosyst., 2011)

More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli. - Anna-Katharina Göhler; Öznur Kökpinar; Wolfgang Schmidt-Heck; Robert Geffers; Reinhard Guthke; Ursula Rinas; Stefan Schuster; Knut Jahreis; Christoph Kaleta (BMC Syst. Biol., 2011)

In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans. - Christoph Kaleta; Luis F. de Figueiredo; Sarah Werner; Reinhard Guthke; Michael Ristow; Stefan Schuster (PLoS Comput. Biol., 2011)

Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition. - Gundián M. de Hijas-Liste; Eva Balsa-Canto; Julio R. Banga; Christoph Kaleta (MED, 2013)

Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions. - Ralf Schmidt; Silvio Waschina; Daniela Boettger-Schmidt; Christian Kost; Christoph Kaleta (Bioinform., 2015)

Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. - Gundián M. de Hijas-Liste; Eva Balsa-Canto; Jan Ewald; Martin Bartl; Pu Li 001; Julio R. Banga; Christoph Kaleta (BMC Bioinform., 2015)

A minimal model for explaining the higher ATP production in the Warburg effect. - Stefan Schuster; Daniel Boley; Philip Möller; Christoph Kaleta (PeerJ Prepr., 2015)

Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities. - Sebastian Germerodt; Katrin Bohl; Anja Lück; Samay Pande; Anja Schröter; Christoph Kaleta; Stefan Schuster; Christian Kost (PLoS Comput. Biol., 2016)

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. - Eugen Bauer; Johannes Zimmermann; Federico Baldini; Ines Thiele; Christoph Kaleta (PLoS Comput. Biol., 2017)

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. - Jan Ewald; Martin Bartl; Thomas Dandekar; Christoph Kaleta (PLoS Comput. Biol., 2017)

Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. - Jan Ewald; Flora Rivieccio; Lukás Radosa; Stefan Schuster; Axel A. Brakhage; Christoph Kaleta (PLoS Comput. Biol., 2021)