Contour Area Filtering of two-dimensional electrophoresis images. - Ramakrishnan Kazhiyur-Mannar; Dominic J. Smiraglia; Christoph Plass; Rephael Wenger (Medical Image Anal., 2006)

Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells. - Ruth Merkle; Bernhard Steiert; Florian Salopiata; Sofia Depner; Andreas Raue; Nao Iwamoto; Max Schelker; Helge Hass; Marvin Wäsch; Martin E. Böhm; Oliver Mücke; Daniel B. Lipka; et al. (PLoS Comput. Biol., 2016)

Enrichment analysis with EpiAnnotator. - Yoann Pageaud; Christoph Plass; Yassen Assenov (Bioinform., 2018)

Methrix: an R/Bioconductor package for systematic aggregation and analysis of bisulfite sequencing data. - Anand Mayakonda; Maximilian Schönung; Joschka Hey; Rajbir Nath Batra; Clarissa Feuerstein-Akgoz; Kristin Köhler; Daniel B. Lipka; Rocio Sotillo; Christoph Plass; Pavlo Lutsik; Reka Toth (Bioinform., 2021)

Netboost: Boosting-Supported Network Analysis Improves High-Dimensional Omics Prediction in Acute Myeloid Leukemia and Huntington's Disease. - Pascal Schlosser; Jochen Knaus; Maximilian Schmutz; Konstanze Döhner; Christoph Plass; Lars Bullinger; Rainer Claus; Harald Binder; Michael Lübbert; Martin Schumacher (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Systematic evaluation of cell-type deconvolution pipelines for sequencing-based bulk DNA methylomes. - Yunhee Jeong; Lisa Barros de Andrade e Sousa; Dominik Thalmeier; Reka Toth; Marlene Ganslmeier; Kersten Breuer; Christoph Plass; Pavlo Lutsik (Briefings Bioinform., 2022)