L-systems and MTGs: Integrating Simulation and Formal Analysis of Architectural Plant Models. - Pascal Ferraro; Christophe Godin; Przemyslaw Prusinkiewicz (ESM, 2002)

Introduction aux structures multi-échelles. Applications à la représentation des plantes. - Christophe Godin (2003)

An Edit Distance between Quotiented Trees. - Pascal Ferraro; Christophe Godin (Algorithmica, 2003)

Interactive Design of Bonsai Tree Models. - Frédéric Boudon; Przemyslaw Prusinkiewicz; Pavol Federl; Christophe Godin; Radoslaw Karwowski (Comput. Graph. Forum, 2003)

Optimal mappings with minimum number of connected components in tree-to-tree comparison problems. - Pascal Ferraro; Christophe Godin (J. Algorithms, 2003)

A Critical Appraisal of the Box Counting Method to Assess the Fractal Dimension of Tree Crowns. - David Da Silva; Frédéric Boudon; Christophe Godin; O. Puech; Colin Smith; Hervé Sinoquet (ISVC (1), 2006)

Multiscale Framework for Modeling and Analyzing Light Interception by Trees. - David Da Silva; Frédéric Boudon; Christophe Godin; Hervé Sinoquet (Multiscale Model. Simul., 2008)

Flux-Based Transport Enhancement as a Plausible Unifying Mechanism for Auxin Transport in Meristem Development. - Szymon Stoma; Mikael Lucas; Jérôme Chopard; Marianne Schaedel; Jan Traas; Christophe Godin (PLoS Comput. Biol., 2008)

Efficient and robust reconstruction of botanical branching structure from laser scanned points. - Dong-Ming Yan 001; Julien Wintz; Bernard Mourrain; Wenping Wang 001; Frédéric Boudon; Christophe Godin (CAD/Graphics, 2009)

Structure from silhouettes: a new paradigm for fast sketch-based design of trees. - Jamie Wither; Frédéric Boudon; Marie-Paule Cani; Christophe Godin (Comput. Graph. Forum, 2009)

PlantGL: A Python-based geometric library for 3D plant modelling at different scales. - Christophe Pradal; Frédéric Boudon; C. Nouguier; Jérôme Chopard; Christophe Godin (Graph. Model., 2009)

Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants. - Christophe Godin; Pascal Ferraro (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

A Combinatorial Model of Phyllotaxis Perturbations in Arabidopsis thaliana. - Yassin Refahi; Etienne Farcot; Yann Guédon; Fabrice Besnard; Teva Vernoux; Christophe Godin (CPM, 2011)

Spatio-temporal registration of embryo images. - Léo Guignard; Christophe Godin; Ulla-Maj Fiuza; Lars Hufnagel; Patrick Lemaire; Grégoire Malandain (ISBI, 2014)

Combining Finite Element Method and L-Systems Using Natural Information Flow Propagation to Simulate Growing Dynamical Systems. - Jean-Philippe Bernard; Benjamin Gilles; Christophe Godin (TPNC, 2014)

3-d Tessellation of Plant Tissue - A Dual Optimization Approach to Cell-Level Meristem Reconstruction from Microscopy Images. - Guillaume Cerutti; Sophie Ribes; Christophe Godin; Carlos Galvan-Ampudia; Teva Vernoux (3DV, 2015)

Meshing Meristems - An Iterative Mesh Optimization Method for Modeling Plant Tissue at Cell Resolution. - Guillaume Cerutti; Christophe Godin (BIOIMAGING, 2015)

An Iterative Mesh Optimization Method for 3D Meristem Reconstruction at Cell Level. - Guillaume Cerutti; Christophe Godin (BIOSTEC (Selected Papers), 2015)

Cell pairings for ascidian embryo registration. - Gael Michelin; Léo Guignard; Ulla-Maj Fiuza; Patrick Lemaire; Christophe Godin; Grégoire Malandain (ISBI, 2015)

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution. - Frédéric Boudon; Jérôme Chopard; Olivier Ali; Benjamin Gilles; Olivier Hamant; Arezki Boudaoud; Jan Traas; Christophe Godin (PLoS Comput. Biol., 2015)

Lossy Compression of Unordered Rooted Trees. - Romain Azaïs; Jean-Baptiste Durand; Christophe Godin (DCC, 2016)

Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems. - Gael Michelin; Yassin Refahi; Raymond Wightman; Henrik Jonsson; Jan Traas; Christophe Godin; Grégoire Malandain (ISBI, 2016)

Modelling Curvature Effects Using L-Systems: From Discrete and Deterministic to Continuous and Stochastic. - Julia Pulwicki; Christophe Godin (TPNC, 2017)

Approximation of trees by self-nested trees. - Romain Azaïs; Jean-Baptiste Durand; Christophe Godin (ALENEX, 2019)

Coupling water fluxes with cell wall mechanics in a multicellular model of plant development. - Ibrahim Cheddadi; Michel Génard; Nadia Bertin; Christophe Godin (PLoS Comput. Biol., 2019)

3D Plant Phenotyping: All You Need is Labelled Point Cloud Data. - Ayan Chaudhury; Frédéric Boudon; Christophe Godin (ECCV Workshops (6), 2020)

BVPy: A FEniCS-based Python package to ease the expression and study of boundary value problems in Biology. - Florian Gacon; Christophe Godin; Olivier Ali (J. Open Source Softw., 2021)

Robust Plant Cell Tracking in Fluorescence Microscopy 3D+T Series. - Manuel Petit; Guillaume Cerutti; Christophe Godin; Grégoire Malandain (ISBI, 2022)

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets. - Anuradha Kar; Manuel Petit; Yassin Refahi; Guillaume Cerutti; Christophe Godin; Jan Traas (PLoS Comput. Biol., 2022)

Characterization of random walks on space of unordered trees using efficient metric simulation. - Farah Ben-Naoum; Christophe Godin; Romain Azaïs (Discret. Appl. Math., 2023)

Learning to Infer Parameterized Representations of Plants from 3D Scans. - Samara Ghrer; Christophe Godin; Stefanie Wuhrer (CoRR, 2025)