AGScan: a pluggable microarray image quantification software based on the ImageJ library. - R. Cathelin; F. Lopez; Christophe Klopp (Bioinform., 2007)

SigReannot-mart: a query environment for expression microarray probe re-annotations. - François Moreews; Gaelle Rauffet; Patrice Déhais; Christophe Klopp (Database J. Biol. Databases Curation, 2011)

jvenn: an interactive Venn diagram viewer. - Philippe Bardou; Jérôme Mariette; Frédéric Escudié; Christophe Djemiel; Christophe Klopp (BMC Bioinform., 2014)

An integrative method to normalize RNA-Seq data. - Cyril Filloux; Cédric Meersseman; Romain Philippe; Lionel Forestier; Christophe Klopp; Dominique Rocha; Abderrahman Maftah; Daniel Petit (BMC Bioinform., 2014)

GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas. - Guillaume Rivière; Christophe Klopp; Nabihoudine Ibouniyamine; Arnaud Huvet; Pierre Boudry; Pascal Favrel (BMC Bioinform., 2015)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Jflow: a workflow management system for web applications. - Jérôme Mariette; Frédéric Escudié; Philippe Bardou; Nabihoudine Ibouniyamine; Céline Noirot; Marie-Stéphane Trotard; Christine Gaspin; Christophe Klopp (Bioinform., 2016)

Siberian sturgeon multi-tissue reference transcriptome database. - Christophe Klopp; Cédric Cabau; Gonzalo Greif; André Lasalle; Santiago Di Landro; Denise Vizziano-Cantonnet (Database J. Biol. Databases Curation, 2020)

DNAModAnnot: a R toolbox for DNA modification filtering and annotation. - Alexis Hardy; Mélody Matelot; Amandine Touzeau; Christophe Klopp; Céline Lopez-Roques; Sandra Duharcourt; Matthieu Defrance (Bioinform., 2021)

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker. - Sarah Maman; Philippe Bardou; Emilien Lasguignes; Faustine Oudin; Floréal Cabanettes; Christophe Klopp (J. Open Source Softw., 2024)