Exploring Dependencies Between Yeast Stress Genes and Their Regulators. - Janne Nikkilä; Christophe Roos; Samuel Kaski (IDEAL, 2004)

Exploratory modeling of yeast stress response and its regulation with gcca and associative clustering. - Janne Nikkilä; Christophe Roos; Eerika Savia; Samuel Kaski (Int. J. Neural Syst., 2005)

Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets. - Samuel Kaski; Janne Nikkilä; Janne Sinkkonen; Leo Lahti; Juha E. A. Knuuttila; Christophe Roos (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

State Space Modeling of yeast gene Expression Dynamics. - Olli Haavisto; Heikki Hyötyniemi; Christophe Roos (J. Bioinform. Comput. Biol., 2007)

DBComposer: An R package for integrative analysis and management of gene expression microarray data. - Lingjia Kong; Kaisa-Leena Aho; Kirsi Granberg; Christophe Roos; Reija Autio (GENSiPS, 2013)