Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data. - Andreas Tjärnberg; Omar Mahmood; Christopher A. Jackson; Giuseppe-Antonio Saldi; Kyunghyun Cho; Lionel A. Christiaen; Richard A. Bonneau (PLoS Comput. Biol., 2021)

High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. - Claudia Skok Gibbs; Christopher A. Jackson; Giuseppe-Antonio Saldi; Andreas Tjärnberg; Aashna Shah; Aaron Watters; Nicholas De Veaux; Konstantine Tchourine; Ren Yi; Tymor Hamamsy; Dayanne M. Castro; Nicholas Carriero; et al. (Bioinform., 2022)