BioStar: An Online Question & Answer Resource for the Bioinformatics Community. - Laurence D. Parnell; Pierre Lindenbaum; Khader Shameer; Giovanni Marco Dall'Olio; Daniel C. Swan; Lars Juhl Jensen; Simon J. Cockell; Brent S. Pedersen; Mary E. Mangan; Christopher A. Miller 002; István Albert (PLoS Comput. Biol., 2011)

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution. - Christopher A. Miller 002; Brian S. White; Nathan D. Dees; Malachi Griffith; John S. Welch; Obi L. Griffith; Ravi Vij; Michael H. Tomasson; Timothy A. Graubert; Matthew J. Walter; Matthew J. Ellis; William S. Schierding; et al. (PLoS Comput. Biol., 2014)

Genome Modeling System: A Knowledge Management Platform for Genomics. - Malachi Griffith; Obi L. Griffith; Scott M. Smith; Avinash Ramu; Matthew B. Callaway; Anthony M. Brummett; Michael J. Kiwala; Adam C. Coffman; Allison A. Regier; Benjamin J. Oberkfell; Gabriel E. Sanderson; Thomas P. Mooney; et al. (PLoS Comput. Biol., 2015)

Bam-readcount - rapid generation of basepair-resolution sequence metrics. - Ajay Khanna; David E. Larson; Srivatsan Sridhar; Matthew Mosior; Travis E. Abbott; Susanna Kiwala; Timothy J. Ley; Eric J. Duncavage; Matthew J. Walter; Jason R. Walker; Obi L. Griffith; Malachi Griffith; et al. (J. Open Source Softw., 2022)