DNA Sequence Evolution with Neighbor-Dependent Mutation. - Peter F. Arndt; Christopher B. Burge; Terence Hwa (J. Comput. Biol., 2003)

Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals. - Gene W. Yeo; Christopher B. Burge (J. Comput. Biol., 2004)

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. - William G. Fairbrother; Gene W. Yeo; Rufang Yeh; Paul Goldstein; Matthew Mawson; Phillip A. Sharp; Christopher B. Burge (Nucleic Acids Res., 2004)

Recognition of Unknown Conserved Alternatively Spliced Exons. - Uwe Ohler; Noam Shomron; Christopher B. Burge (PLoS Comput. Biol., 2005)

Combo: a whole genome comparative browser. - Reinhard Engels; Tamara Yu; Christopher B. Burge; Jill P. Mesirov; David DeCaprio; James E. Galagan (Bioinform., 2006)

HOLLYWOOD: a comparative relational database of alternative splicing. - Dirk Holste; George Huo; Vivian Tung; Christopher B. Burge (Nucleic Acids Res., 2006)

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data. - Daniel Ramsköld; Eric T. Wang; Christopher B. Burge; Rickard Sandberg (PLoS Comput. Biol., 2009)

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation. - Tarmo Äijö; Vincent Butty; Zhi Jane Chen; Verna Salo; Subhash Tripathi; Christopher B. Burge; Riitta Lahesmaa; Harri Lähdesmäki (Bioinform., 2014)

Quantitative visualization of alternative exon expression from RNA-seq data. - Yarden Katz; Eric T. Wang; Jacob Silterra; Schraga Schwartz; Bang Wong; Helga Thorvaldsdóttir; James T. Robinson; Jill P. Mesirov; Edoardo M. Airoldi; Christopher B. Burge (Bioinform., 2015)

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins. - Louis Philip Benoit Bouvrette; Xiaofeng Wang; Jonathan Boulais; Jian Kong; Easin Uddin Syed; Steven M. Blue; Lijun Zhan; Sara Olson; Rebecca Stanton; Xintao Wei; Brian Yee; Eric L. Van nostrand; et al. (Nucleic Acids Res., 2023)