MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function. - Zeyang Shen; Marten A. Hoeksema; Zhengyu Ouyang; Christopher Benner; Christopher K. Glass (Bioinform., 2020)

ARTDeco: automatic readthrough transcription detection. - Samuel J. Roth; Sven Heinz; Christopher Benner (BMC Bioinform., 2020)

MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates. - Nathaniel P. Delos Santos; Lorane Texari; Christopher Benner (BMC Bioinform., 2020)