Multiscale community detection in Cytoscape. - Akshat Singhal; Song Cao; Christopher Churas; Dexter Pratt; Santo Fortunato; Fan Zheng; Trey Ideker (PLoS Comput. Biol., 2020)

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange. - Rudolf T. Pillich; Jing Chen; Christopher Churas; Dylan Fong; Benjamin M. Gyori; Trey Ideker; Klas Karis; Sophie N. Liu; Keiichiro Ono; Alexander R. Pico; Dexter Pratt (Bioinform., 2023)