Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection. - Christopher J. Conley; Robert Smith 001; Ralf J. O. Torgrip; Ryan M. Taylor; Ralf Tautenhahn; John T. Prince (Bioinform., 2014)

CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments. - H. Atakan Ekiz; Christopher J. Conley; W. Zac Stephens; Ryan M. O'Connell (BMC Bioinform., 2020)