CRANN: detecting adaptive evolution in protein-coding DNA sequences. - C. J. Creevey; James O. McInerney (Bioinform., 2003)

Clann: investigating phylogenetic information through supertree analyses. - C. J. Creevey; James O. McInerney (Bioinform., 2005)

STRING 8 - a global view on proteins and their functional interactions in 630 organisms. - Lars Juhl Jensen; Michael Kuhn 004; Manuel Stark; Samuel Chaffron; Christopher J. Creevey; Jean Muller; Tobias Doerks; Philippe Julien; Alexander Roth 001; Milan Simonovic; Peer Bork; Christian von Mering (Nucleic Acids Res., 2009)

AQUA: automated quality improvement for multiple sequence alignments. - Jean Muller; Christopher J. Creevey; Julie Dawn Thompson; Detlev Arendt; Peer Bork (Bioinform., 2010)

Identifying Single Copy Orthologs in Metazoa. - Christopher J. Creevey; Jean Muller; Tobias Doerks; Julie Dawn Thompson; Detlev Arendt; Peer Bork (PLoS Comput. Biol., 2011)

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms. - Anthony G. Doran; Christopher J. Creevey (BMC Bioinform., 2013)

L.U.St: a tool for approximated maximum likelihood supertree reconstruction. - Wasiu A. Akanni; Christopher J. Creevey; Mark D. Wilkinson; Davide Pisani (BMC Bioinform., 2014)

eggNOG v4.0: nested orthology inference across 3686 organisms. - Sean Powell; Kristoffer Forslund; Damian Szklarczyk; Kalliopi Trachana; Alexander Roth 001; Jaime Huerta-Cepas; Toni Gabaldón; Thomas Rattei; Christopher J. Creevey; Michael Kuhn 004; Lars Juhl Jensen; Christian von Mering; et al. (Nucleic Acids Res., 2014)

Spherical: an iterative workflow for assembling metagenomic datasets. - Thomas C. A. Hitch; Christopher J. Creevey (BMC Bioinform., 2018)

On the complexity of haplotyping a microbial community. - Samuel M. Nicholls; Wayne Aubrey; Kurt De Grave; Leander Schietgat; Christopher J. Creevey; Amanda Clare (Bioinform., 2021)

No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study. - Nicholas J. Dimonaco; Wayne Aubrey; Kim Kenobi; Amanda Clare; Christopher J. Creevey (Bioinform., 2022)