OOPSE: An object-oriented parallel simulation engine for molecular dynamics. - Matthew A. Meineke; Charles F. Vardeman II; Teng Lin; Christopher J. Fennell; J. Daniel Gezelter (J. Comput. Chem., 2005)

Testing the semi-explicit assembly solvation model in the SAMPL3 community blind test. - Charles W. Kehoe; Christopher J. Fennell; Ken A. Dill (J. Comput. Aided Mol. Des., 2012)

Testing the semi-explicit assembly model of aqueous solvation in the SAMPL4 challenge. - Libo Li; Ken A. Dill; Christopher J. Fennell (J. Comput. Aided Mol. Des., 2014)

Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the SAMPL5 molecules. - Emiliano Brini; S. Shanaka Paranahewage; Christopher J. Fennell; Ken A. Dill (J. Comput. Aided Mol. Des., 2016)

Predicting water-to-cyclohexane partitioning of the SAMPL5 molecules using dielectric balancing of force fields. - S. Shanaka Paranahewage; Cassidy S. Gierhart; Christopher J. Fennell (J. Comput. Aided Mol. Des., 2016)

OpenMD: A parallel molecular dynamics engine for complex systems and interfaces. - Cody R. Drisko; Hemanta Bhattarai; Christopher J. Fennell; Kelsey M. Stocker; Charles F. Vardeman II; J. Daniel Gezelter (J. Open Source Softw., 2024)