Sound Analysis, Comparison and Modification Based on Perceptual Model of Timbre. - Christopher James Langmead (ICMC, 1995)

Extracting structural information using time-frequency analysis of protein NMR data. - Christopher James Langmead; Bruce Randall Donald (RECOMB, 2001)

A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns. - Christopher James Langmead; C. Robertson McClung; Bruce Randall Donald (CSB, 2002)

3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. - Christopher James Langmead; Bruce Randall Donald (CSB, 2003)

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. - Christopher James Langmead; Anthony K. Yan; Ryan H. Lilien; Lincong Wang; Bruce Randall Donald (RECOMB, 2003)

Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. - Christopher James Langmead; Anthony K. Yan; C. Robertson McClung; Bruce Randall Donald (J. Comput. Biol., 2003)

Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. - K. Arun; Christopher James Langmead (CSB, 2004)

High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. - Christopher James Langmead; Bruce Randall Donald (CSB, 2004)

A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. - Christopher James Langmead; Anthony K. Yan; Ryan H. Lilien; Lincong Wang; Bruce Randall Donald (J. Comput. Biol., 2004)

A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology. - Anthony K. Yan; Christopher James Langmead; Bruce Randall Donald (Int. J. Robotics Res., 2005)

Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. - K. Arun; Christopher James Langmead (APBC, 2006)

A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. - Christopher James Langmead (APBC, 2006)

Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. - Christopher James Langmead; Sumit Kumar Jha 001 (WABI, 2007)

Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. - Edmund M. Clarke; James R. Faeder; Christopher James Langmead; Leonard A. Harris; Sumit Kumar Jha 001; Axel Legay (CMSB, 2008)

Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. - Hetunandan Kamisetty; Eric P. Xing; Christopher James Langmead (J. Comput. Biol., 2008)

A Bayesian Approach to Model Checking Biological Systems. - Sumit Kumar Jha 001; Edmund M. Clarke; Christopher James Langmead; Axel Legay; André Platzer; Paolo Zuliani (CMSB, 2009)

A Bayesian approach to protein model quality assessment. - Hetunandan Kamisetty; Christopher James Langmead (ICML, 2009)

Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. - Alexandre Donzé; Gilles Clermont; Axel Legay; Christopher James Langmead (RECOMB, 2009)

Symbolic Approaches for Finding Control Strategies in Boolean Networks. - Christopher James Langmead; Sumit Kumar Jha 001 (J. Bioinform. Comput. Biol., 2009)

Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. - Subhodeep Moitra; Naveena Yanamala; Öznur Tastan; Irtisha Singh; Christopher James Langmead; Judith Klein-Seetharaman (SoSE, 2010)

Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. - Alexandre Donzé; Gilles Clermont; Christopher James Langmead (J. Comput. Biol., 2010)

An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. - Arvind Ramanathan; Pratul K. Agarwal; Maria G. Kurnikova; Christopher James Langmead (J. Comput. Biol., 2010)

When to stop verification?: Statistical trade-off between expected loss and simulation cost. - Sumit Kumar Jha 001; Christopher James Langmead; Swarup Mohalik; S. Ramesh 002 (DATE, 2011)

Exploring behaviors of SDE models of biological systems using change of measures. - Sumit Kumar Jha 001; Christopher James Langmead (ICCABS, 2011)

Poster: Synthesis of biochemical models. - Sumit Kumar Jha 001; Christopher James Langmead (ICCABS, 2011)

Approximating Correlated Equilibria using Relaxations on the Marginal Polytope. - Hetunandan Kamisetty; Eric P. Xing; Christopher James Langmead (ICML, 2011)

Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement. - Sumit Kumar Jha 001; Christopher James Langmead (Theor. Comput. Sci., 2011)

Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems. - Arup K. Ghosh; Faraz Hussain 001; Sumit Kumar Jha 001; Christopher James Langmead; Susmit Jha (ICCABS, 2012)

Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing. - Faraz Hussain 001; Raj Gautam Dutta; Sumit Kumar Jha 001; Christopher James Langmead; Susmit Jha (ICCABS, 2012)

Exploring behaviors of stochastic differential equation models of biological systems using change of measures. - Sumit Kumar Jha 001; Christopher James Langmead (BMC Bioinform., 2012)

Learning generative models of molecular dynamics. - Narges Razavian; Hetunandan Kamisetty; Christopher James Langmead (BMC Genom., 2012)

Synthesis of insulin pump controllers from safety specifications using Bayesian model validation. - Sumit Kumar Jha 001; Raj Gautam Dutta; Christopher James Langmead; Susmit Jha; Emily Sassano (Int. J. Bioinform. Res. Appl., 2012)

Parameter discovery for stochastic computational models in systems biology using Bayesian model checking. - Faraz Hussain 001; Christopher James Langmead; Qi Mi; Joyeeta Dutta-Moscato; Yoram Vodovotz; Sumit Kumar Jha 001 (ICCABS, 2014)

Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model. - Arup Kumar Ghosh; Faraz Hussain 001; Susmit Jha; Christopher James Langmead; Sumit Kumar Jha 001 (Int. J. Bioinform. Res. Appl., 2014)

Parameter discovery in stochastic biological models using simulated annealing and statistical model checking. - Faraz Hussain 001; Sumit Kumar Jha 001; Susmit Jha; Christopher James Langmead (Int. J. Bioinform. Res. Appl., 2014)

Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. - Hetunandan Kamisetty; Bornika Ghosh; Christopher James Langmead; Chris Bailey-Kellogg (J. Comput. Biol., 2015)

Automated parameter estimation for biological models using Bayesian statistical model checking. - Faraz Hussain 001; Christopher J. Langmead; Qi Mi; Joyeeta Dutta-Moscato; Yoram Vodovotz; Sumit Kumar Jha 001 (BMC Bioinform., 2015)

Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution. - Trevor S. Frisby; Christopher J. Langmead (WABI, 2020)

Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution. - Trevor S. Frisby; Christopher James Langmead (Algorithms Mol. Biol., 2021)

Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories. - Trevor S. Frisby; Zhiyun Gong; Christopher James Langmead (Bioinform., 2021)

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data. - Trevor S. Frisby; Shawn J. Baker; Guillaume Marçais; Quang Minh Hoang; Carl Kingsford; Christopher J. Langmead (BMC Bioinform., 2021)

Unifying Cardiovascular Modelling with Deep Reinforcement Learning for Uncertainty Aware Control of Sepsis Treatment. - Thesath Nanayakkara; Gilles Clermont; Christopher James Langmead; David Swigon (CoRR, 2021)

Deep Normed Embeddings for Patient Representation. - Thesath Nanayakkara; Gilles Clermont; Christopher James Langmead; David Swigon (CoRR, 2022)

Peptide binding classification on quantum computers. - Charles London; Douglas Brown; Wenduan Xu; Sezen Vatansever; Christopher J. Langmead; Dimitri Kartsaklis; Stephen Clark; Konstantinos Meichanetzidis (Quantum Mach. Intell., 2024)

Structure-Aligned Protein Language Model. - Can Chen 005; David Heurtel-Depeiges; Robert M. Vernon; Christopher James Langmead; Yoshua Bengio; Quentin Fournier (CoRR, 2025)