Genome-wide detection of alternative splicing in expressed sequences of human genes. - Barmak Modrek; Alissa M. Resch; Catherine S. Grasso; Christopher J. Lee (Nucleic Acids Res., 2001)

Multiple sequence alignment using partial order graphs. - Christopher J. Lee; Catherine S. Grasso; Mark F. Sharlow (Bioinform., 2002)

POAVIZ: A Partial Order Multiple Sequence Alignment Visualizer. - Catherine S. Grasso; Michael Quist; Kevin Ke; Christopher J. Lee (Bioinform., 2003)

Generating Consensus Sequences from Partial Order Multiple Sequence Alignment Graphs. - Christopher J. Lee (Bioinform., 2003)

ASAP: the Alternative Splicing Annotation Project. - Christopher J. Lee; Levan Atanelov; Barmak Modrek; Yi Xing (Nucleic Acids Res., 2003)

Evolving from Bioinformatics in-the-Small to Bioinformatics in-the-Large. - Douglas Stott Parker Jr.; Michael M. Gorlick; Christopher J. Lee (OMICS, 2003)

Genome-Wide Detection of Alternative Splicing in Expressed Sequences Using Partial Order Multiple Sequence Alignment Graphs. - Catherine S. Grasso; Barmak Modrek; Yi Xing; Christopher J. Lee (Pacific Symposium on Biocomputing, 2004)

Session Introduction. - Hui Wang 007; U. Yang; Christopher J. Lee; John Blume (Pacific Symposium on Biocomputing, 2004)

Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems. - Catherine S. Grasso; Christopher J. Lee (Bioinform., 2004)

Bioinformatics analysis of alternative splicing. - Christopher J. Lee; Qi Wang 073 (Briefings Bioinform., 2005)

Assessing the application of Ka/Ks ratio test to alternatively spliced exons. - Yi Xing; Christopher J. Lee (Bioinform., 2005)

Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. - Alexander V. Alekseyenko; Christopher J. Lee (Bioinform., 2007)

QPRIMER: a quick web-based application for designing conserved PCR primers from multigenome alignments. - Namshin Kim; Christopher J. Lee (Bioinform., 2007)

Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption with 3D visualization. - Namshin Kim; Christopher J. Lee (BMC Bioinform., 2007)

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. - Namshin Kim; Alexander V. Alekseyenko; Meenakshi Roy; Christopher J. Lee (Nucleic Acids Res., 2007)

The HIV positive selection mutation database. - Calvin Pan; Joseph Kim; Lamei Chen; Qi Wang 073; Christopher J. Lee (Nucleic Acids Res., 2007)

Solving the Problem of Trans-Genomic Query with Alignment Tables. - Douglas Stott Parker Jr.; Ruey-Lung Hsiao; Yi Xing; Alissa M. Resch; Christopher J. Lee (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Predicting Functional Alternative Splicing by Measuring RNA Selection Pressure from Multigenome Alignments. - Hongchao Lu; Lan Lin; Seiko Sato; Yi Xing; Christopher J. Lee (PLoS Comput. Biol., 2009)

Empirical Information Metrics for Prediction Power and Experiment Planning. - Christopher J. Lee (Inf., 2011)

Basic Experiment Planning via Information Metrics: the RoboMendel Problem - Christopher J. Lee; Marc Harper (CoRR, 2012)

Open Peer Review by a Selected-Papers Network. - Christopher J. Lee (Frontiers Comput. Neurosci., 2012)

Exploring the characteristics of crowdsourcing: An online observational study. - Harpreet Bassi; Christopher J. Lee; Laura Misener; Andrew M. Johnson 001 (J. Inf. Sci., 2020)

Macro-Queries: An Exploration into Guided Chart Generation from High Level Prompts. - Christopher J. Lee; Giorgio Tran; Roderick S. Tabalba; Jason Leigh; Ryan Longman (CoRR, 2024)

ArticulatePro: A Comparative Study on a Proactive and Non-Proactive Assistant in a Climate Data Exploration Task. - Roderick S. Tabalba; Christopher J. Lee; Giorgio Tran; Nurit Kirshenbaum; Jason Leigh (CoRR, 2024)

A Pragmatics-based Approach to Proactive Digital Assistants for Data Exploration. - Roderick S. Tabalba; Christopher J. Lee; Giorgio Tran; Nurit Kirshenbaum; Jason Leigh (CUI, 2025)