Toward Robust and Extensible Automatic Protocol Identification. - George Louthan; Collin McMillan; Christopher Johnson 004; John Hale (International Conference on Internet Computing, 2009)

Mapping the cortical representation of speech sounds in a syllable repetition task. - Christopher J. Markiewicz; Jason W. Bohland (NeuroImage, 2016)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Michael Dayan; Alexandre Manhães-Savio; Michael Philipp Notter; et al. (Zenodo, 2016)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Jason Wong; Michael Dayan; Alexandre Manhães-Savio; et al. (Zenodo, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher J. Markiewicz; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; et al. (Zenodo, 2017)

nipy/nipype: Nipype - v1.0.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Michael Philipp Notter; Christopher Burns 002; David Gage Ellis; Hans J. Johnson; Alexandre Manhães-Savio; Carlo Hämäläinen; Dorota Jarecka; Benjamin Yvernault; Christopher J. Markiewicz; et al. (Zenodo, 2018)

nipy/nipype: 1.0.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Christopher J. Markiewicz; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Christopher J. Markiewicz; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.0.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Christopher J. Markiewicz; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.1.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hamalainen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.5. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.6. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.7. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan Nielson; et al. (J. Open Source Softw., 2019)

nipy/nipype: 1.1.8. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

bids-standard/pybids: 0.7.0. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Quinten McNamara; Krista Destasio; Yaroslav O. Halchenko; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan Nielson; et al. (Zenodo, 2019)

nipy/nipype: 1.1.9. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

bids-standard/pybids: 0.7.1. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan Nielson; et al. (Zenodo, 2019)

bids-standard/pybids: 0.8.0. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan M. Nielson; et al. (Zenodo, 2019)

nipy/nibabel: 2.4.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 2.4.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

bids-standard/pybids: 0.9.1. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan M. Nielson; et al. (Zenodo, 2019)

bids-standard/pybids: 0.9.0. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan M. Nielson; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan M. Nielson; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

bids-standard/pybids: 0.9.3. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan M. Nielson; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Dmitry Petrov; Valérie Hayot-Sasson; Dylan Nielson; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Dmitry Petrov; Hans J. Johnson; Valérie Hayot-Sasson; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Hans J. Johnson; Dmitry Petrov; Valérie Hayot-Sasson; et al. (Zenodo, 2019)

Software Tool to Read, Represent, Manipulate, and Apply N-Dimensional Spatial Transforms. - Oscar Esteban; Mathias Goncalves; Christopher J. Markiewicz; Satrajit S. Ghosh; Russell A. Poldrack (ISBI, 2020)

Pydra - a flexible and lightweight dataflow engine for scientific analyses. - Dorota Jarecka; Mathias Goncalves; Christopher J. Markiewicz; Oscar Esteban; Nicole Lo; Jakub Kaczmarzyk; Satrajit S. Ghosh (SciPy, 2020)

nipy/nibabel: 3.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

nipy/nibabel: 3.0.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 2.5.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

TE-dependent analysis of multi-echo fMRI with tedana. - Elizabeth Dupre; Taylor Salo; Zaki Ahmed; Peter A. Bandettini; Katherine L. Bottenhorn; César Caballero-Gaudes; Logan Dowdle; Javier Gonzalez-Castillo; Stephan Heunis; Prantik Kundu; Angela R. Laird; Ross D. Markello; et al. (J. Open Source Softw., 2021)

NiTransforms: A Python tool to read, represent, manipulate, and apply dimensional spatial transforms. - Mathias Goncalves; Christopher J. Markiewicz; Stefano Moia; Satrajit S. Ghosh; Russell A. Poldrack; Oscar Esteban (J. Open Source Softw., 2021)

DataLad: distributed system for joint management of code, data, and their relationship. - Yaroslav O. Halchenko; Kyle Meyer; Benjamin Poldrack; Debanjum Singh Solanky; Adina S. Wagner; Jason Gors; Dave MacFarlane; Dorian Pustina; Vanessa V. Sochat; Satrajit S. Ghosh; Christian Mönch; Christopher J. Markiewicz; et al. (J. Open Source Softw., 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2021)

Open and reproducible neuroimaging: From study inception to publication. - Guiomar Niso; Rotem Botvinik-Nezer; Stefan Appelhoff; Alejandro de la Vega; Oscar Esteban; Joset A. Etzel; Karolina Finc; Melanie Ganz; Rémi Gau; Yaroslav O. Halchenko; Peer Herholz; Agah Karakuzu; et al. (NeuroImage, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nibabel: 3.2.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel: 4.0.0rc0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Rémi Gau; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Rémi Gau; Hans J. Johnson; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Rémi Gau; Hans J. Johnson; et al. (Zenodo, 2022)

A Comparison of Neuroelectrophysiology Databases. - Priyanka Subash; Alex Gray; Misque Boswell; Samantha L. Cohen; Rachael Garner; Sana Salehi; Calvary Fisher; Samuel Hobel; Satrajit S. Ghosh; Yaroslav O. Halchenko; Benjamin K. Dichter; Russell A. Poldrack; et al. (CoRR, 2023)

nipy/nibabel: 5.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Rémi Gau; Jean-Baptiste Poline; Hans J. Johnson; et al. (Zenodo, 2023)

nipy/nibabel: 5.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Rémi Gau; Dimitri Papadopoulos Orfanos; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; François Paugam; Nicolas Gensollen; Christopher J. Markiewicz; Bertrand Thirion; Pierre Bellec (Zenodo, 2023)

A reproducible benchmark of resting-state fMRI denoising strategies using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; François Paugam; Nicolas Gensollen; Christopher J. Markiewicz; Bertrand Thirion; Pierre Bellec (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2023)

bids-specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2023)

nipy/nibabel: 5.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2023)

HeuDiConv - flexible DICOM conversion into structured directory layouts. - Yaroslav O. Halchenko; Mathias Goncalves; Satrajit S. Ghosh; Pablo Velasco; Matteo Visconti di Oleggio Castello; Taylor Salo; John T. Wodder; Michael Hanke; Patrick S. Sadil; Krzysztof J. Gorgolewski; Horea-Ioan Ioanas; Chris Rorden; et al. (J. Open Source Softw., 2024)

Continuous evaluation of denoising strategies in resting-state fMRI connectivity using fMRIPrep and Nilearn. - Hao-Ting Wang; Steven L. Meisler; Hanad Sharmarke; Natasha Clarke; Nicolas Gensollen; Christopher J. Markiewicz; François Paugam; Bertrand Thirion; Pierre Bellec (PLoS Comput. Biol., 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

nipy/nibabel: 5.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexis Thual; Alisha Kodibagkar; Amadeus Kanaan; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Rémi Gau; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Rémi Gau; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

The Brain Imaging Data Structure (BIDS) Specification. - Aaron Oliver-Taylor; Adam Li; Adam G. Thomas; Adeen Flinker; Adina S. Wagner; Agah Karakuzu; Aki Nikolaidis; Alberto Lazari; Alejandro de la Vega; Alessio Giacomel; Alexander Rockhill; Alexander Jones; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)

nilearn. - Nilearn Contributors; Ahmad Chamma; Aina Frau-Pascual; Alex Rothberg; Alexandre Abadie; Alexandre Abraham; Alexandre Gramfort; Alexandre Savio; Alexandre Cionca; Alexandre Sayal; Alexis Thual; Alisha Kodibagkar; et al. (Zenodo, 2025)

A Numerical Variability Approach to Results Stability Tests and Its Application to Neuroimaging. - Yohan Chatelain; Loïc Tetrel; Christopher J. Markiewicz; Mathias Goncalves; Gregory Kiar; Oscar Esteban; Pierre Bellec; Tristan Glatard (IEEE Trans. Computers, 2025)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2025)