Combining Biological Databases and Text Mining to Support New Bioinformatics Applications. - René Witte; Christopher J. O. Baker (NLDB, 2005)

The FungalWeb Ontology: Semantic Web Challenges in Bioinformatics and Genomics. - Arash Shaban-Nejad; Christopher J. O. Baker; Volker Haarslev; Greg Butler (ISWC, 2005)

Ontoligent Interactive Query Tool. - Christopher J. O. Baker; Xiao Su; Greg Butler; Volker Haarslev (CSWWS, 2006)

A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data. - Farzad Kohantorabi; Gregory Butler; Christopher J. O. Baker (CSWWS, 2006)

Using Selectional Restrictions to Query an OWL Ontology. - Leila Kosseim; Reda Siblini; Christopher J. O. Baker; Sabine Bergler (FOIS, 2006)

Mutation Mining-A Prospector's Tale. - Christopher J. O. Baker; René Witte (Inf. Syst. Frontiers, 2006)

Semantic web infrastructure for fungal enzyme biotechnologists. - Christopher J. O. Baker; Arash Shaban-Nejad; Xiao Su; Volker Haarslev; Greg Butler (J. Web Semant., 2006)

Literature-driven, Ontology-centric Knowledge Navigation for Lipidomics. - Kanagasabai Rajaraman; Hong Sang Low; Wee Tiong Ang; Anitha Veeramani; Markus R. Wenk; Christopher J. O. Baker (FIRST, 2007)

Enhanced semantic access to the protein engineering literature using ontologies populated by text mining. - René Witte; Thomas Kappler; Christopher J. O. Baker (Int. J. Bioinform. Res. Appl., 2007)

A Workflow for Mutation Extraction and Structure Annotation. - Kanagasabai Rajaraman; Khar Heng Choo; Shoba Ranganathan; Christopher J. O. Baker (J. Bioinform. Comput. Biol., 2007)

Towards a Systematic Evaluation of protein Mutation Extraction Systems. - René Witte; Christopher J. O. Baker (J. Bioinform. Comput. Biol., 2007)

Online everywhere: evolving mobile instant messaging practices. - Donald J. Patterson; Christopher J. O. Baker; Xianghua Ding; Samuel J. Kaufman; Kah Liu; Andrew Zaldivar (UbiComp, 2008)

Knowledge Translation: Computing the Query Potential of Bio-ontologies. - Wee Tiong Ang; Rajaraman Kanagasabai; Christopher J. O. Baker (SWAT4LS, 2008)

Towards ontology-driven navigation of the lipid bibliosphere. - Christopher J. O. Baker; Kanagasabai Rajaraman; Wee Tiong Ang; Anitha Veeramani; Hong Sang Low; Markus R. Wenk (BMC Bioinform., 2008)

The Second International Symposium on Languages in Biology and Medicine (LBM) 2007. - Jian Su 002; Christopher J. O. Baker (BMC Bioinform., 2008)

Ontology-centric integration and navigation of the dengue literature. - Menaka Rajapakse; Kanagasabai Rajaraman; Wee Tiong Ang; Anitha Veeramani; Mark J. Schreiber; Christopher J. O. Baker (J. Biomed. Informatics, 2008)

Slicing through the Scientific Literature. - Christopher J. O. Baker; Patrick Lambrix; Jonas Laurila Bergman; Kanagasabai Rajaraman; Wee Tiong Ang (DILS, 2009)

Between proteins and phenotypes: annotation and interpretation of mutations. - Christopher J. O. Baker; Dietrich Rebholz-Schuhmann (BMC Bioinform., 2009)

Algorithm for Grounding Mutation Mentions from Text to Protein Sequences. - Jonas Laurila Bergman; Rajaraman Kanagasabai; Christopher J. O. Baker (DILS, 2010)

Leverage of OWL-DL axioms in a Contact Centre for Technical Product Support. - Alexandre Kouznetsov; Bradley Shoebottom; René Witte; Christopher J. O. Baker (OWLED, 2010)

Extraction and Grounding of Protein Mutations via Semantic Integration of Text and Sequence Information. - Christopher J. O. Baker; Rajaraman Kanagasabai (AINA, 2011)

Algorithm for Population of Object Property Assertions Derived from Telecom Contact Centre Product Support Documentation. - Alexandre Kouznetsov; Jonas B. Laurila; Christopher J. O. Baker; Bradley Shoebottom (AINA Workshops, 2011)

Leveraging SADI Semantic Web Services to Exploit Fish Ecotoxicology Data. - Matthew M. Hindle; Alexandre Riazanov; Edward S. Goudreau; Christopher J. Martyniuk; Christopher J. O. Baker (CSWS, 2011)

Knowledge-based Surveillance for Preventing Postoperative Surgical Site Infection. - Arash Shaban-Nejad; Gregory W. Rose; Anya Okhmatovskaia; Alexandre Riazanov; Christopher J. O. Baker; Robyn Tamblyn; Alan J. Forster; David L. Buckeridge (MIE, 2011)

Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data. - Alexandre Riazanov; Gregory W. Rose; Artjom Klein; Alan J. Forster; Christopher J. O. Baker; Arash Shaban-Nejad; David L. Buckeridge (SWAT4LS, 2011)

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents. - Nona Naderi; Thomas Kappler; Christopher J. O. Baker; René Witte (Bioinform., 2011)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. - Leonid L. Chepelev; Alexandre Riazanov; Alexandre Kouznetsov; Hong Sang Low; Michel Dumontier; Christopher J. O. Baker (BMC Bioinform., 2011)

Deploying mutation impact text-mining software with the SADI Semantic Web Services framework. - Alexandre Riazanov; Jonas Laurila Bergman; Christopher J. O. Baker (BMC Bioinform., 2011)

PSOA RuleML API: A Tool for Processing Abstract and Concrete Syntaxes. - Mohammad Sadnan Al Manir; Alexandre Riazanov; Harold Boley; Christopher J. O. Baker (RuleML, 2012)

Ecotoxicology Data Federation with SADI Semantic Web Services. - Alexandre Riazanov; Matthew M. Hindle; E. Scott Goudreau; Chris Martyniuk; Christopher J. O. Baker (SWAT4LS, 2012)

HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections. - Arash Shaban-Nejad; Alexandre Riazanov; Katia M. L. Charland; Gregory W. Rose; Christopher J. O. Baker; Robyn Tamblyn; Alan J. Forster; David L. Buckeridge (ANT/MobiWIS, 2012)

Generating Semantic Web Services from Declarative Descriptions. - Mohammad Sadnan Al Manir; Alexandre Riazanov; Harold Boley; Christopher J. O. Baker (CSWS, 2013)

Towards Interoperable BioNLP Semantic Web Services Using the SADI Framework. - Ahmad C. Bukhari; Artjom Klein; Christopher J. O. Baker (DILS, 2013)

Semantic querying of relational data for clinical intelligence: a semantic web services-based approach. - Alexandre Riazanov; Artjom Klein; Arash Shaban-Nejad; Gregory W. Rose; Alan J. Forster; David L. Buckeridge; Christopher J. O. Baker (J. Biomed. Semant., 2013)

Offshore Holdings Analytics Using Datalog+ RuleML Rules. - Mohammad Sadnan Al Manir; Christopher J. O. Baker (Challenge+DC@RuleML, 2014)

SEBI: An Architecture for Biomedical Image Discovery, Interoperability and Reusability Based on Semantic Enrichment. - Syed Ahmad Chan Bukhari; Michael Krauthammer; Christopher J. O. Baker (SWAT4LS, 2014)

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. - Michel Dumontier; Christopher J. O. Baker; Joachim Baran; Alison Callahan; Leonid L. Chepelev; Jose Cruz-Toledo; Nicholas R. Del Rio; Geraint Duck; Laura Inés Furlong; Nichealla Keath; Dana Klassen; Jamie P. McCusker; et al. (J. Biomed. Semant., 2014)

Benchmarking infrastructure for mutation text mining. - Artjom Klein; Alexandre Riazanov; Matthew M. Hindle; Christopher J. O. Baker (J. Biomed. Semant., 2014)

BIM: an open ontology for the annotation of biomedical images. - Ahmad C. Bukhari; Mate Levente Nagy; Michael Krauthammer; Paolo Ciccarese; Christopher J. O. Baker (ICBO, 2015)

iCyrus: A Semantic Framework for Biomedical Image Discovery. - Syed Ahmad Chan Bukhari; Mate Levente Nagy; Paolo Ciccarese; Michael Krauthammer; Christopher J. O. Baker (SWAT4LS, 2015)

Automated Generation of SADI Web Services for Clinical Intelligence using Ruled-Based Semantic Mappings. - Mohammad Sadnan Al Manir; Alexandre Riazanov; Harold Boley; Artjom Klein; Christopher J. O. Baker (SWAT4LS, 2015)

Valet SADI: Provisioning SADI Web Services for Semantic Querying of Relational Databases. - Mohammad Sadnan Al Manir; Alexandre Riazanov; Harold Boley; Artjom Klein; Christopher J. O. Baker (IDEAS, 2016)

Automated generation of SADI semantic web services for clinical intelligence. - Mohammad Sadnan Al Manir; Alexandre Riazanov; Harold Boley; Artjom Klein; Christopher J. O. Baker (SBD@SIGMOD, 2016)

From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections. - Arash Shaban-Nejad; Hiroshi Mamiya; Alexandre Riazanov; Alan J. Forster; Christopher J. O. Baker; Robyn Tamblyn; David L. Buckeridge (J. Medical Syst., 2016)

A Change Management Dashboard for the SIEMA Global Malaria Surveillance Infrastructure. - Jon Haël Brenas; Mohammad Sadnan Al Manir; Christopher J. O. Baker; Arash Shaban-Nejad (ISWC (Posters, Demos & Industry Tracks), 2017)

A Malaria Analytics Framework to Support Evolution and Interoperability of Global Health Surveillance Systems. - Jon Haël Brenas; Mohammad Sadnan Al Manir; Christopher J. O. Baker; Arash Shaban-Nejad (IEEE Access, 2017)

Exploring Semantic Data Federation to Enable Malaria Surveillance Queries. - Jon Haël Brenas; Mohammad Sadnan Al Manir; Kate Zinszer; Christopher J. O. Baker; Arash Shaban-Nejad (MIE, 2018)

Design of a framework to support reuse of Open Data about agriculture. - Alec Gordon; Mohammad Sadnan Al Manir; Brandon Smith; Amir Hossein Rezaie; Christopher J. O. Baker (SWAT4LS, 2018)

Decision Support for Agricultural Consultants With Semantic Data Federation. - Mohammad Sadnan Al Manir; Bruce Spencer; Christopher J. O. Baker (Int. J. Agric. Environ. Inf. Syst., 2018)

A Working Semantic Model for the Integration of Occupation, Function and Health. - Anil Adisesh; Hongchang Bao; Mohammad Sadnan Al Manir; Christopher J. O. Baker (SWAT4HCLS, 2019)

A Surveillance Infrastructure for Malaria Analytics: Provisioning Data Access and Preservation of Interoperability. - Mohammad Sadnan Al Manir; Jon Haël Brenas; Christopher J. O. Baker; Arash Shaban-Nejad (CoRR, 2019)

Perspectives on automated composition of workflows in the life sciences. - Anna-Lena Lamprecht; Magnus Palmblad; Jon C. Ison; Veit Schwämmle; Mohammad Sadnan Al Manir; Ilkay Altintas; Christopher J. O. Baker; Ammar Ben Hadj Amor; Salvador Capella-Gutiérrez; Paulos Charonyktakis; Michael R. Crusoe; Yolanda Gil; et al. (F1000Research, 2021)