Quantitative measurement of protease ligand conformation. - Christopher J. R. Illingworth; Kevin E. B. Parkes; Christopher R. Snell; Christopher A. Reynolds (J. Comput. Aided Mol. Des., 2008)

Closed loop folding units from structural alignments: Experimental foldons revisited. - Sree V. Chintapalli; Boon K. Yew; Christopher J. R. Illingworth; Graham J. G. Upton; Philip J. Reeves; Kevin E. B. Parkes; Christopher R. Snell; Christopher A. Reynolds (J. Comput. Chem., 2010)

Connectivity and binding-site recognition: Applications relevant to drug design. - Christopher J. R. Illingworth; Paul D. Scott; Kevin E. B. Parkes; Christopher R. Snell; Matthew P. Campbell; Christopher A. Reynolds (J. Comput. Chem., 2010)

A method to infer positive selection from marker dynamics in an asexual population. - Christopher J. R. Illingworth; Ville Mustonen (Bioinform., 2012)

The statistical significance of selected sense-antisense peptide interactions. - Christopher J. R. Illingworth; Sree V. Chintapalli; Stefano A. Serapian; Andrew D. Miller 002; Vaclav Veverka; Mark D. Carr; Christopher A. Reynolds (J. Comput. Chem., 2012)

The statistical significance of selected sense-antisense peptide interactions [J. Comp. Chem. 33, 1440-1447]. - Christopher J. R. Illingworth; Sree V. Chintapalli; Stefano A. Serapian; Andrew D. Miller 002; Vaclav Veverka; Mark D. Carr; Christopher A. Reynolds (J. Comput. Chem., 2013)

Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data. - Christopher J. R. Illingworth; Andrej Fischer; Ville Mustonen (PLoS Comput. Biol., 2014)

SAMFIRE: multi-locus variant calling for time-resolved sequence data. - Christopher J. R. Illingworth (Bioinform., 2016)

Building a mechanistic mathematical model of hepatitis C virus entry. - Mphatso Kalemera; Dilyana Mincheva; Joe Grove; Christopher J. R. Illingworth (PLoS Comput. Biol., 2019)

The NOSTRA model: Coherent estimation of infection sources in the case of possible nosocomial transmission. - David J. Pascall; Christopher Jackson; Stephanie Evans; Theodore Gouliouris; Christopher J. R. Illingworth; Stefan G. Piatek; Julie V. Robotham; Oliver Stirrup; Ben Warne; Judith Breuer; Daniela De Angelis (PLoS Comput. Biol., 2025)