LMSD: LIPID MAPS structure database. - Manish Sud; Eoin Fahy; Dawn Cotter; Alex Brown; Edward A. Dennis; Christopher K. Glass; Alfred H. Merrill Jr.; Robert C. Murphy; Christian R. H. Raetz; David W. Russell; Shankar Subramaniam (Nucleic Acids Res., 2007)

Peak-Finding Refinement in the Chip-SEQ Experiment. - Lana X. Garmire; David G. Garmire; Chris Benner; Pang Ko; Christopher K. Glass; Shankar Subramaniam (CAINE, 2008)

A Clustering Approach to Identify Intergenic Non-coding RNA in Mouse Macrophages. - Lana X. Garmire; Shankar Subramaniam; David G. Garmire; Christopher K. Glass (BIBE, 2010)

Integration of lipidomics and transcriptomics data towards a systems biology model of sphingolipid metabolism. - Shakti Gupta; Mano Ram Maurya; Alfred H. Merrill Jr.; Christopher K. Glass; Shankar Subramaniam (BMC Syst. Biol., 2011)

A combined omics study on activated macrophages - enhanced role of STATs in apoptosis, immunity and lipid metabolism. - Ashok Reddy Dinasarapu; Shakti Gupta; Mano Ram Maurya; Eoin Fahy; Jun Min; Manish Sud; Merril J. Gersten; Christopher K. Glass; Shankar Subramaniam (Bioinform., 2013)

MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function. - Zeyang Shen; Marten A. Hoeksema; Zhengyu Ouyang; Christopher Benner; Christopher K. Glass (Bioinform., 2020)

TIANA: transcription factors cooperativity inference analysis with neural attention. - Rick Z. Li; Claudia Z. Han; Christopher K. Glass (BMC Bioinform., 2024)