Information-based methods for predicting gene function from systematic gene knock-downs. - Matthew T. Weirauch; Christopher K. Wong; Alexandra B. Byrne; Joshua M. Stuart (BMC Bioinform., 2008)

The UCSC Interaction Browser: multidimensional data views in pathway context. - Christopher K. Wong; Charles J. Vaske; Sam Ng; J. Zachary Sanborn; Stephen C. Benz; David Haussler; Joshua M. Stuart (Nucleic Acids Res., 2013)

Using Transcriptional Signatures to Find Cancer Drivers with LURE. - David Haan; Ruikang Tao; Verena Friedl; Ioannis N. Anastopoulos; Christopher K. Wong; Alana S. Weinstein; Joshua M. Stuart (PSB, 2020)

Accurate cancer phenotype prediction with AKLIMATE, a stacked kernel learner integrating multimodal genomic data and pathway knowledge. - Vladislav Uzunangelov; Christopher K. Wong; Joshua M. Stuart (PLoS Comput. Biol., 2021)