Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports. - Elissaveta G. Arnaoudova; Philip J. Bowens; Roger G. Chui; Randy D. Dinkins; Uljana Hesse; Jerzy W. Jaromczyk; Mitchell Martin; Paul Maynard; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2009)

Phylotree - a toolkit for computing experiments with distance-based methods for genome coevolution. - Elissaveta G. Arnaoudova; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl; Ruriko Yoshida (BMC Bioinform., 2010)

Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster. - Daniel R. Harris; Jerzy W. Jaromczyk; Christopher L. Schardl (BMC Bioinform., 2010)

Finding long protein products of alternatively spliced genes. - Neil Moore; Jerzy W. Jaromczyk; Christopher L. Schardl (BMC Bioinform., 2012)

A linear-time algorithm for finding a maximum-length ORF in a splice graph. - Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (Int. J. Comput. Biol. Drug Des., 2012)

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2. - Roger G. Chui; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2013)

Using HPC for teaching and learning bioinformatics software: Benefits and challenges. - Tyler Parke; Mark L. Farman; Elizabeth Farnsworth; Derek Fox; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Christopher L. Schardl; Ruriko Yoshida; Patrick Calie (BMC Bioinform., 2013)

kdetrees: non-parametric estimation of phylogenetic tree distributions. - Grady Weyenberg; Peter Huggins; Christopher L. Schardl; Daniel K. Howe; Ruriko Yoshida (Bioinform., 2014)

An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis. - Mark L. Farman; Patrick Calie; Jerzy W. Jaromczyk; Jolanta Jaromczyk; Neil Moore; Daniel R. Harris; Christopher L. Schardl (BMC Bioinform., 2014)

Automating deployment of several GBrowse instances. - Neil Moore; Jerzy W. Jaromczyk; Christopher L. Schardl; Joedocei Hill; Devin Wright (BMC Bioinform., 2014)

Validation and quality assurance for genome browser database exports. - Roger G. Chui; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2015)

CURatio: Genome-Wide Phylogenomic Analysis Method Using Ratios of Total Branch Lengths. - Qiwen Kang; Neil Moore; Christopher L. Schardl; Ruriko Yoshida (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

RNA-clique: a method for computing genetic distances from RNA-seq data. - Andrew C. Tapia; Jerzy W. Jaromczyk; Neil Moore; Christopher L. Schardl (BMC Bioinform., 2024)