New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence. - Mengfei Cao; Christopher M. Pietras; Xian Feng; Kathryn J. Doroschak; Thomas Schaffner; Jisoo Park; Hao Zhang; Lenore J. Cowen; Benjamin J. Hescott (Bioinform., 2014)

Scalable FRaC Variants: Anomaly Detection for Precision Medicine. - Cyrus Cousins; Christopher M. Pietras; Donna K. Slonim (IPDPS Workshops, 2017)

TEMPO: Detecting Pathway-Specific Temporal Dysregulation of Gene Expression in Disease. - Christopher Michael Pietras; Faith Ocitti; Donna K. Slonim (BCB, 2018)

aTEMPO: Pathway-Specific Temporal Anomalies for Precision Therapeutics. - Christopher Michael Pietras; Liam Power; Donna K. Slonim (PSB, 2020)