Constant-time and space-efficient unidirectional and bidirectional FM-indices using EPR-dictionaries. - Christopher Pockrandt; Marcel Ehrhardt; Knut Reinert (CoRR, 2016)

EPR-Dictionaries: A Practical and Fast Data Structure for Constant Time Searches in Unidirectional and Bidirectional FM Indices. - Christopher Pockrandt; Marcel Ehrhardt; Knut Reinert (RECOMB, 2017)

FAMOUS: Fast Approximate string Matching using OptimUm search Schemes. - Kiavash Kianfar; Christopher Pockrandt; Bahman Torkamandi; Haochen Luo; Knut Reinert (CoRR, 2017)

Approximate String Matching: Improving Data Structures and Algorithms. - Christopher Pockrandt (2019)

GenMap: ultra-fast computation of genome mappability. - Christopher Pockrandt; Mai Alzamel; Costas S. Iliopoulos; Knut Reinert (Bioinform., 2020)

TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets. - Ales Varabyou; Geo Pertea; Christopher Pockrandt; Mihaela Pertea (Bioinform., 2021)

PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools. - Christopher Pockrandt; Martin Steinegger; Steven L. Salzberg (Bioinform., 2022)

Metagenomic classification with KrakenUniq on low-memory computers. - Christopher Pockrandt; Aleksey V. Zimin; Steven L. Salzberg (J. Open Source Softw., 2022)