A Hamiltonian Formulation for Recursive Multiple Thermostats in a Common Timescale. - Benedict J. Leimkuhler; Christopher R. Sweet (SIAM J. Appl. Dyn. Syst., 2005)

MDL, A Domain-Specific Language for Molecular Dynamics. - Trevor M. Cickovski; Chris Sweet; Jesús A. Izaguirre (Annual Simulation Symposium, 2007)

Multiscale Dynamics of Macromolecules Using Normal Mode Langevin. - Jesús A. Izaguirre; Christopher R. Sweet; Vijay S. Pande (Pacific Symposium on Biocomputing, 2010)

MDLab: A molecular dynamics simulation prototyping environment. - Trevor M. Cickovski; Santanu Chatterjee; Jacob Wenger; Christopher R. Sweet; Jesús A. Izaguirre (J. Comput. Chem., 2010)

Modeling Conformational Ensembles of Slow Functional Motions in Pin1-WW. - Faruck Morcos; Santanu Chatterjee; Christopher L. McClendon; Paul R. Brenner; Roberto López-Rendón; John Zintsmaster; Mária Ercsey-Ravasz; Christopher R. Sweet; Matthew P. Jacobson; Jeffrey W. Peng; Jesús A. Izaguirre (PLoS Comput. Biol., 2010)

DiffGradCAM: A Universal Class Activation Map Resistant to Adversarial Training. - Jacob Piland; Chris Sweet; Adam Czakja (CoRR, 2025)

Divisive Decisions: Improving Salience-Based Training for Generalization in Binary Classification Tasks. - Jacob Piland; Chris Sweet; Adam Czajka (CoRR, 2025)