Biomolecular Computation in Virtual Test Tubes. - Max H. Garzon; Chris Oehmen (DNA, 2001)

SVM-BALSA: Remote homology detection based on Bayesian sequence alignment. - Bobbie-Jo M. Webb-Robertson; Christopher S. Oehmen; Melissa M. Matzke (Comput. Biol. Chem., 2005)

Bandwidth challenge - High throughput feature-matching analysis of biological spectral data. - Christopher S. Oehmen; Douglas J. Baxter; Ryan W. Mooney; Shaun O'Leary; Tim Carlson (SC, 2006)

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. - Christopher S. Oehmen; Lee Ann McCue; Joshua N. Adkins; Katrina M. Waters; Tim Carlson; William R. Cannon; Bobbie-Jo M. Webb-Robertson; Douglas J. Baxter; Elena S. Peterson; Mudita Singhal; Anuj R. Shah; Kyle R. Klicker (SC, 2006)

ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis. - Chris Oehmen; Jarek Nieplocha (IEEE Trans. Parallel Distributed Syst., 2006)

Support Vector Machine Classification of Probability Models and Peptide Features for Improved Peptide Identification from Shotgun Proteomics. - Bobbie-Jo M. Webb-Robertson; Christopher S. Oehmen; William R. Cannon (ICMLA, 2007)

PQuad - a visual analysis platform for proteomic data exploration of microbial organisms. - Bobbie-Jo M. Webb-Robertson; Elena S. Peterson; Mudita Singhal; Kyle R. Klicker; Christopher S. Oehmen; Joshua N. Adkins; Susan L. Havre (Bioinform., 2007)

Integrating subcellular location for improving machine learning models of remote homology detection in eukaryotic organisms. - Anuj R. Shah; Christopher S. Oehmen; Jill Harper; Bobbie-Jo M. Webb-Robertson (Comput. Biol. Chem., 2007)

Dimension Reduction via Unsupervised Learning Yields Significant Computational Improvements for Support Vector Machine Based Protein Family Classification. - Bobbie-Jo M. Webb-Robertson; Melissa M. Matzke; Christopher S. Oehmen (ICMLA, 2008)

A Secure Web Application Providing Public Access to High-Performance Data Intensive Scientific Resources - ScalaBLAST Web Application. - Darren S. Curtis; Elena S. Peterson; Christopher S. Oehmen (WEBIST (1), 2008)

SVM-HUSTLE - an iterative semi-supervised machine learning approach for pairwise protein remote homology detection. - Anuj R. Shah; Christopher S. Oehmen; Bobbie-Jo M. Webb-Robertson (Bioinform., 2008)

A feature vector integration approach for a generalized support vector machine pairwise homology algorithm. - Bobbie-Jo M. Webb-Robertson; Christopher S. Oehmen; Anuj R. Shah (Comput. Biol. Chem., 2008)

An organic model for detecting cyber-events. - Christopher S. Oehmen; Elena S. Peterson; Scott Dowson (CSIIRW, 2010)

An adaptive middleware framework for Scientific Computing at extreme scales. - Arzu Gosney; Christopher S. Oehmen; Adam Wynne; Justin Almquist (IRI, 2010)

Applications in Data-Intensive Computing. - Anuj R. Shah; Joshua N. Adkins; Douglas J. Baxter; William R. Cannon; Daniel G. Chavarría-Miranda; Sutanay Choudhury; Ian Gorton; Deborah K. Gracio; Todd D. Halter; Navdeep Jaitly; John R. Johnson; Richard T. Kouzes; et al. (Adv. Comput., 2010)

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. - Bobbie-Jo M. Webb-Robertson; William R. Cannon; Christopher S. Oehmen; Anuj R. Shah; Vidhya Gurumoorthi; Mary S. Lipton; Katrina M. Waters (Bioinform., 2010)

Physicochemical property distributions for accurate and rapid pairwise protein homology detection. - Bobbie-Jo M. Webb-Robertson; Kyle G. Ratuiste; Christopher S. Oehmen (BMC Bioinform., 2010)

An Adaptive Middleware Framework for Optimal Scheduling on Large Scale Compute Clusters. - Arzu Gosney; John H. Miller; Ian Gorton; Christopher S. Oehmen (ITNG, 2011)

Bio-Inspired Enterprise Security. - Glenn A. Fink; Christopher S. Oehmen; Jereme N. Haack; A. David McKinnon; Errin W. Fulp; Michael B. Crouse (SASO, 2011)

An efficient machine learning approach to low-complexity filtering in biological sequences. - Christopher A. Barber; Christopher S. Oehmen (CIBCB, 2012)

Directional Bias and Pheromone for Discovery and Coverage on Networks. - Glenn A. Fink; Kenneth S. Berenhaut; Christopher S. Oehmen (SASO, 2012)

Evolutionary drift models for moving target defense. - Christopher S. Oehmen; Elena S. Peterson; Jeremy Teuton (CSIIRW, 2013)

A generalized bio-inspired method for discovering sequence-based signatures. - Elena S. Peterson; Darren S. Curtis; Aaron R. Phillips; Jeremy Teuton; Christopher S. Oehmen (ISI, 2013)

ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems. - Christopher S. Oehmen; Douglas J. Baxter (Bioinform., 2013)

SafeConfig 2015: Workshop on Automated Decision Making for Active Cyber Defense. - Ehab Al-Shaer; Christopher S. Oehmen; Mohammad Ashiqur Rahman (CCS, 2015)

Automated Decision Making for Active Cyber Defense: Panel Discussion. - Christopher S. Oehmen; Ehab Al-Shaer; Mohammad Ashiqur Rahman (SafeConfig@CCS, 2015)

Behavior-dependent Routing: Responding to Anomalies with Automated Low-cost Measures. - Christopher S. Oehmen; Thomas E. Carroll; Patrick C. Paulson; Daniel M. Best; Christine F. Noonan; Seth R. Thompson; Jeffrey L. Jensen; Glenn A. Fink; Elena S. Peterson (SafeConfig@CCS, 2015)

Behavior Models to Express and Share Threat Information. - Chris Oehmen; Elena S. Peterson; B. Ann Cox (IT Prof., 2015)

Formal Approach for Resilient Reachability based on End-System Route Agility. - Usman Rauf; Fida Gillani; Ehab Al-Shaer; Mahantesh Halappanavar; Samrat Chatterjee; Christopher S. Oehmen (MTD@CCS, 2016)

SafeConfig'16: Testing and Evaluation for Active & Resilient Cyber Systems Panel Verification of Active and Resilient Systems: Practical or Utopian? - Nicholas J. Multari; Anoop Singhal; David O. Manz; Robert Cowles; Jorge Cuéllar; Christopher S. Oehmen; Gregory E. Shannon (SafeConfig@CCS, 2016)

LINEBACKER: LINE-Speed Bio-Inspired Analysis and Characterization for Event Recognition. - Christopher S. Oehmen; Paul J. Bruillard; Brett D. Matzke; Aaron R. Phillips; Keith T. Star; Jeffrey L. Jensen; Doug Nordwall; Seth R. Thompson; Elena S. Peterson (IEEE Symposium on Security and Privacy Workshops, 2016)

A Biosequence-Based Approach to Software Characterization. - Christopher S. Oehmen; Elena S. Peterson; Aaron R. Phillips; Darren S. Curtis (IEEE Symposium on Security and Privacy Workshops, 2016)

Advanced Computing is at the Forefront of a New "Moonshot" Revolutionizing the North American Power Grid. - Christopher S. Oehmen; Slaven Peles; Katarzyna Swirydowicz; Cosmin G. Petra; Shrirang Abhyankar; Wesley B. Jones; Matthew Reynolds; Cameron Rutherford (Comput. Sci. Eng., 2024)