Compressing Genomic Sequence Fragments Using SlimGene. - Christos Kozanitis; Christopher T. Saunders; Semyon Kruglyak; Vineet Bafna; George Varghese (J. Comput. Biol., 2011)

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. - Christopher T. Saunders; Wendy S. W. Wong; Sajani Swamy; Jennifer Becq; Lisa J. Murray; R. Keira Cheetham (Bioinform., 2012)

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. - Come Raczy; Roman Petrovski; Christopher T. Saunders; Ilya Chorny; Semyon Kruglyak; Elliott H. Margulies; Han-Yu Chuang; Morten Källberg; Swathi A. Kumar; Arnold Liao; Kristina M. Little; Michael P. Strömberg; et al. (Bioinform., 2013)

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. - Xiaoyu Chen; Ole Schulz-Trieglaff; Richard Shaw; Bret Barnes; Felix Schlesinger; Morten Källberg; Anthony J. Cox; Semyon Kruglyak; Christopher T. Saunders (Bioinform., 2016)