Making Computational Models Accessible through Ontologies and Visualization Tools. - Nazanin Tabesh-Saleki; Mary Shimoyama; Brian E. Carlson; Christopher T. Thompson; Daniel A. Beard (AMIA, 2012)

Innovative Use of Ontologies: Association of Physiological Pathways to Corresponding Computational Models and Disparate Data Types. - Nazanin Tabesh-Saleki; Brian E. Carlson; Christopher T. Thompson; Maxwell Lewis Neal; Daniel L. Cook; Mary Shimoyama (AMIA, 2013)

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems. - Maxwell Lewis Neal; Michael T. Cooling; Lucian P. Smith; Christopher T. Thompson; Herbert M. Sauro; Brian E. Carlson; Daniel L. Cook; John H. Gennari (PLoS Comput. Biol., 2014)

SemGen: a tool for semantics-based annotation and composition of biosimulation models. - Maxwell Lewis Neal; Christopher T. Thompson; Karam G. Kim; Ryan C. James; Daniel L. Cook; Brian E. Carlson; John H. Gennari (Bioinform., 2019)