A Fast Shotgun Assembly Heuristic. - Christopher Wilks; Sami Khuri (CSB Workshops, 2005)

The Arabidopsis Information Resource (TAIR): gene structure and function annotation. - David Swarbreck; Christopher Wilks; Philippe Lamesch; Tanya Z. Berardini; Margarita Garcia-Hernandez; Hartmut Foerster; Donghui Li; Tom Meyer; Robert J. Muller; Larry Ploetz; Amie Radenbaugh; Shanker Singh; et al. (Nucleic Acids Res., 2008)

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. - Philippe Lamesch; Tanya Z. Berardini; Donghui Li; David Swarbreck; Christopher Wilks; Rajkumar Sasidharan; Robert J. Muller; Kate Dreher; Debbie L. Alexander; Margarita Garcia-Hernandez; Athikkattuvalasu S. Karthikeyan; Cynthia H. Lee; et al. (Nucleic Acids Res., 2012)

The UCSC Cancer Genomics Browser: update 2013. - Mary Goldman; Brian Craft; Teresa Swatloski; Kyle Ellrott; Melissa S. Cline; Mark Diekhans; Singer Ma; Chris Wilks; Joshua M. Stuart; David Haussler; Jingchun Zhu (Nucleic Acids Res., 2013)

The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data. - Christopher Wilks; Melissa S. Cline; Erich Weiler; Mark Diekhans; Brian Craft; Christy Martin; Daniel Murphy; Howdy Pierce; John Black; Donavan Nelson; Brian Litzinger; Thomas Hatton; et al. (Database J. Biol. Databases Curation, 2014)

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. - Abhinav Nellore; Christopher Wilks; Kasper D. Hansen; Jeffrey T. Leek; Ben Langmead (Bioinform., 2016)

Rail-RNA: scalable analysis of RNA-seq splicing and coverage. - Abhinav Nellore; Leonardo Collado-Torres; Andrew E. Jaffe; José Alquicira-Hernández; Christopher Wilks; Jacob Pritt; James Morton; Jeffrey T. Leek; Ben Langmead (Bioinform., 2017)

Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples. - Christopher Wilks; Phani Gaddipati; Abhinav Nellore; Ben Langmead (Bioinform., 2018)

Scaling read aligners to hundreds of threads on general-purpose processors. - Ben Langmead; Christopher Wilks; Valentin Antonescu; Rone Charles (Bioinform., 2019)

Megadepth: efficient coverage quantification for BigWigs and BAMs. - Christopher Wilks; Omar Y. Ahmed; Daniel N. Baker; David Zhang; Leonardo Collado-Torres; Ben Langmead (Bioinform., 2021)