Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components. - Christopher Y. Park; David C. Hess; Curtis Huttenhower; Olga G. Troyanskaya (PLoS Comput. Biol., 2010)

IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks. - Aaron K. Wong; Christopher Y. Park; Casey S. Greene; Lars Ailo Bongo; Yuanfang Guan; Olga G. Troyanskaya (Nucleic Acids Res., 2012)

Functional Knowledge Transfer for High-accuracy Prediction of Under-studied Biological Processes. - Christopher Y. Park; Aaron K. Wong; Casey S. Greene; Jessica Rowland; Yuanfang Guan; Lars Ailo Bongo; Rebecca D. Burdine; Olga G. Troyanskaya (PLoS Comput. Biol., 2013)

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. - Christopher Y. Park; Arjun Krishnan; Qian Zhu 005; Aaron K. Wong; Young-Suk Lee; Olga G. Troyanskaya (Bioinform., 2015)

An automated framework for efficiently designing deep convolutional neural networks in genomics. - Zijun Zhang; Christopher Y. Park; Chandra L. Theesfeld; Olga G. Troyanskaya (Nat. Mach. Intell., 2021)