Evolution of Recombination on an HIV-1 Derived Fitness Landscape. - João Martins; Roger D. Kouyos; Trevor Hinkley; Colombe Chappey; Mojgan Haddad; Jeannette M. Whitcomb; Christos J. Petropoulos; Sebastian Bonhoeffer (ALIFE, 2010)

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase. - Rafal Mostowy; Roger D. Kouyos; Ilka Hoof; Trevor Hinkley; Mojgan Haddad; Jeannette M. Whitcomb; Christos J. Petropoulos; Can Kesmir; Sebastian Bonhoeffer (PLoS Comput. Biol., 2012)

A Case-Based Reasoning System for Genotypic Prediction of HIV-1 Co-receptor tropism. - Mark C. Evans; Agnes C. Paquet; Wei Huang; Laura Napolitano; Arne Frantzell; Jonathan Toma; Eric W. Stawiski; Matthew Bidwell Goetz; Christos J. Petropoulos; Jeannette M. Whitcomb; Eoin Coakley; Mojgan Haddad (J. Bioinform. Comput. Biol., 2013)

Predicting HIV-1 broadly neutralizing antibody epitope networks using neutralization titers and a novel computational method. - Mark C. Evans; Pham Phung; Agnes C. Paquet; Anvi Parikh; Christos J. Petropoulos; Terri Wrin; Mojgan Haddad (BMC Bioinform., 2014)