An FPGA task allocator with preliminary First-Fit 2D packing algorithms. - Chuan Hong; Khaled Benkrid; Xabier Iturbe; Ahmet T. Erdogan; Tughrul Arslan (AHS, 2011)

Enabling FPGAs for future deep space exploration missions: Improving fault-tolerance and computation density with R3TOS. - Xabier Iturbe; Khaled Benkrid; Tughrul Arslan; Chuan Hong; Ahmet T. Erdogan; Imanol Martinez (AHS, 2011)

Empty Resource Compaction Algorithms for Real-Time Hardware Tasks Placement on Partially Reconfigurable FPGAs Subject to Fault Ocurrence. - Xabier Iturbe; Khaled Benkrid; Tughrul Arslan; Chuan Hong; Imanol Martinez (ReConFig, 2011)

Snake: An Efficient Strategy for the Reuse of Circuitry and Partial Computation Results in High-Performance Reconfigurable Computing. - Xabier Iturbe; Khaled Benkrid; Ali Ebrahim; Chuan Hong; Tughrul Arslan; Imanol Martinez (ReConFig, 2011)

Efficient On-Chip Task Scheduler and Allocator for Reconfigurable Operating Systems. - Chuan Hong; Khaled Benkrid; Xabier Iturbe; Ali Ebrahim; Tughrul Arslan (IEEE Embed. Syst. Lett., 2011)

A novel high-performance fault-tolerant ICAP controller. - Ali Ebrahim; Khaled Benkrid; Xabier Iturbe; Chuan Hong (AHS, 2012)

Design and implementation of fault-tolerant soft processors on FPGAs. - Chuan Hong; Khaled Benkrid; Xabier Iturbe; Ali Ebrahim (FPL, 2012)

An adaptive FPGA implementation of multi-core K-nearest neighbour ensemble classifier using dynamic partial reconfiguration. - Hanaa M. Hussain; Khaled Benkrid; Chuan Hong; Huseyin Seker (FPL, 2012)

Multiple-clone configuration of relocatable partial bitstreams in Xilinx Virtex FPGAs. - Ali Ebrahim; Khaled Benkrid; Xabier Iturbe; Chuan Hong (AHS, 2013)

A platform for secure IP integration in Xilinx Virtex FPGAs. - Ali Ebrahim; Khaled Benkrid; Jalal Khalifat; Chuan Hong (ReConFig, 2013)

Runtime Scheduling, Allocation, and Execution of Real-Time Hardware Tasks onto Xilinx FPGAs Subject to Fault Occurrence. - Xabier Iturbe; Khaled Benkrid; Chuan Hong; Ali Ebrahim; Tughrul Arslan; Imanol Martinez (Int. J. Reconfigurable Comput., 2013)

A run-time reconfigurable system for adaptive high performance efficient computing. - Chuan Hong; Khaled Benkrid; Mohd Nazrin Md. Isa; Xabier Iturbe (SIGARCH Comput. Archit. News, 2013)

R3TOS: A Novel Reliable Reconfigurable Real-Time Operating System for Highly Adaptive, Efficient, and Dependable Computing on FPGAs. - Xabier Iturbe; Khaled Benkrid; Chuan Hong; Ali Ebrahim; Raul Torrego; Imanol Martinez; Tughrul Arslan; Jon Pérez 001 (IEEE Trans. Computers, 2013)

R3TOS-Based Autonomous Fault-Tolerant Systems. - Xabier Iturbe; Ali Ebrahim; Khaled Benkrid; Chuan Hong; Tughrul Arslan; Jon Pérez 001; Didier Keymeulen; Marco D. Santambrogio (IEEE Micro, 2014)

Microkernel Architecture and Hardware Abstraction Layer of a Reliable Reconfigurable Real-Time Operating System (R3TOS). - Xabier Iturbe; Khaled Benkrid; Chuan Hong; Ali Ebrahim; Raul Torrego; Tughrul Arslan (ACM Trans. Reconfigurable Technol. Syst., 2015)

High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. - Katherine P. Liao; Jiehuan Sun; Tianrun A. Cai; Nicholas B. Link; Chuan Hong; Jie Huang 030; Jennifer E. Huffman; Jessica L. Gronsbell; Lauren Costa; Victor M. Castro; Vivian S. Gainer; Shawn N. Murphy; et al. (AMIA, 2018)

PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. - Jennifer A. Sinnott; Fiona Cai; Sheng Yu 002; Boris P. Hejblum; Chuan Hong; Isaac S. Kohane; Katherine P. Liao (J. Am. Medical Informatics Assoc., 2018)

sureLDA: A Novel Multi-Disease Automated Phenotyping Method for the Electronic Health Record. - Yuri Ahuja; Doudou Zhou; Zeling He; Jiehuan Sun; Victor M. Castro; Vivian S. Gainer; Shawn N. Murphy; Chuan Hong; Tianxi Cai (AMIA, 2019)

High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. - Katherine P. Liao; Jiehuan Sun; Tianrun A. Cai; Nicholas B. Link; Chuan Hong; Jie Huang 030; Jennifer E. Huffman; Jessica L. Gronsbell; Yichi Zhang; Yuk-Lam Ho; Victor M. Castro; Vivian S. Gainer; et al. (J. Am. Medical Informatics Assoc., 2019)

SAMGEP: A Novel Method for Prediction of Phenotype Event Times Using the Electronic Health Record. - Yuri Ahuja; Chuan Hong; Zongqi Xia; Tianxi Cai (AMIA, 2020)

High-throughput relation extraction algorithm development associating knowledge articles and electronic health records. - Yucong Lin; Keming Lu; Yulin Chen; Chuan Hong; Sheng Yu 002 (CoRR, 2020)

Automated ICD coding via unsupervised knowledge integration (UNITE). - Aaron Sonabend W.; Winston Cai; Yuri Ahuja; Ashwin N. Ananthakrishnan; Zongqi Xia; Sheng Yu 002; Chuan Hong (Int. J. Medical Informatics, 2020)

sureLDA: A multidisease automated phenotyping method for the electronic health record. - Yuri Ahuja; Doudou Zhou; Zeling He; Jiehuan Sun; Victor M. Castro; Vivian S. Gainer; Shawn N. Murphy; Chuan Hong; Tianxi Cai (J. Am. Medical Informatics Assoc., 2020)

Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. - Jeffrey G. Klann; Hossein Estiri; Griffin M. Weber; Bertrand Moal; Paul Avillach; Chuan Hong; Amelia L. M. Tan; Brett K. Beaulieu-Jones; Victor M. Castro; Thomas Maulhardt; Alon Geva; Alberto Malovini; et al. (J. Am. Medical Informatics Assoc., 2021)

Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. - Chuan Hong; Everett Neil Rush; Molei Liu; Doudou Zhou; Jiehuan Sun; Aaron Sonabend W.; Victor M. Castro; Petra Schubert; Vidul Ayakulangara Panickan; Tianrun Cai; Lauren Costa; Zeling He; et al. (npj Digit. Medicine, 2021)

Knowledge-Driven Online Multimodal Automated Phenotyping System. - Molei Liu; Sara Morini; Xin Xiong; Chuan Hong; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Everett Neil Rush; Yuk-Lam Ho; Kelly Cho; J. Michael Gaziano; Katherine P. Liao; Tianxi Cai; et al. (AMIA, 2022)

Binary acronym disambiguation in clinical notes from electronic health records with an application in computational phenotyping. - Nicholas B. Link; Sicong Huang 005; Tianrun Cai; Jiehuan Sun; Kumar Dahal; Lauren Costa; Kelly Cho; Katherine P. Liao; Tianxi Cai; Chuan Hong (Int. J. Medical Informatics, 2022)

Scalable relevance ranking algorithm via semantic similarity assessment improves efficiency of medical chart review. - Tianrun Cai; Zeling He; Chuan Hong; Yichi Zhang; Yuk-Lam Ho; Jacqueline Honerlaw; Alon Geva; Vidul Ayakulangara Panickan; Amanda King; David R. Gagnon; J. Michael Gaziano; Kelly Cho; et al. (J. Biomed. Informatics, 2022)

Weakly Semi-supervised phenotyping using Electronic Health records. - Isabelle-Emmanuella Nogues; Jun Wen; Yucong Lin; Molei Liu; Sara K. Tedeschi; Alon Geva; Tianxi Cai; Chuan Hong (J. Biomed. Informatics, 2022)

SurvMaximin: Robust federated approach to transporting survival risk prediction models. - Xuan Wang; Harrison G. Zhang; Xin Xiong; Chuan Hong; Griffin M. Weber; Gabriel A. Brat; Clara-Lea Bonzel; Yuan Luo 001; Rui Duan 004; Nathan P. Palmer; Meghan R. Hutch; Alba Gutiérrez-Sacristán; et al. (J. Biomed. Informatics, 2022)

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization. - Doudou Zhou; Ziming Gan; Xu Shi; Alina Patwari; Everett Neil Rush; Clara-Lea Bonzel; Vidul Ayakulangara Panickan; Chuan Hong; Yuk-Lam Ho; Tianrun Cai; Lauren Costa; Xiaoou Li; et al. (J. Biomed. Informatics, 2022)

International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality. - Griffin M. Weber; Chuan Hong; Zongqi Xia; Nicolas Paris; Miguel Pedrera-Jiménez; Ashley C. Pfaff; Emily R. Pfaff; Danielle Pillion; Sara Pizzimenti; Hans-Ulrich Prokosch; Robson A. Prudente; Andrea Prunotto; et al. (npj Digit. Medicine, 2022)

International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. - Harrison G. Zhang; Arianna Dagliati; Zahra Shakeri Hossein Abad; Xin Xiong; Clara-Lea Bonzel; Zongqi Xia; Bryce W. Q. Tan; Paul Avillach; Gabriel A. Brat; Chuan Hong; Michele Morris; Shyam Visweswaran; et al. (npj Digit. Medicine, 2022)

Federated Learning for Clinical Structured Data: A Benchmark Comparison of Engineering and Statistical Approaches. - Siqi Li 004; Di Miao; Qiming Wu 001; Chuan Hong; Danny D'Agostino; Xin Li 079; Yilin Ning; Yuqing Shang; Huazhu Fu; Marcus Eng Hock Ong; Hamed Haddadi; Nan Liu 003 (CoRR, 2023)

Leveraging Anatomical Constraints with Uncertainty for Pneumothorax Segmentation. - Han Yuan; Chuan Hong; Nguyen Tuan Anh Tran; Xinxing Xu; Nan Liu 003 (CoRR, 2023)

Multimodal representation learning for predicting molecule-disease relations. - Jun Wen; Xiang Zhang 012; Everett Neil Rush; Vidul Ayakulangara Panickan; Xingyu Li; Tianrun Cai; Doudou Zhou; Yuk-Lam Ho; Lauren Costa; Edmon Begoli; Chuan Hong; J. Michael Gaziano; et al. (Bioinform., 2023)

Informative missingness: What can we learn from patterns in missing laboratory data in the electronic health record? - Amelia L. M. Tan; Emily J. Getzen; Meghan R. Hutch; Zachary H. Strasser; Alba Gutiérrez-Sacristán; Trang T. Le; Arianna Dagliati; Michele Morris; David A. Hanauer; Bertrand Moal; Clara-Lea Bonzel; William Yuan; et al. (J. Biomed. Informatics, 2023)

Semi-supervised calibration of noisy event risk (SCANER) with electronic health records. - Chuan Hong; Liang Liang; Qianyu Yuan; Kelly Cho; Katherine P. Liao; Michael J. Pencina; David C. Christiani; Tianxi Cai (J. Biomed. Informatics, 2023)

FedScore: A privacy-preserving framework for federated scoring system development. - Siqi Li 004; Yilin Ning; Marcus Eng Hock Ong; Bibhas Chakraborty; Chuan Hong; Feng Xie 004; Han Yuan; Mingxuan Liu; Daniel M. Buckland; Yong Chen 016; Nan Liu 003 (J. Biomed. Informatics, 2023)

Federated and distributed learning applications for electronic health records and structured medical data: a scoping review. - Siqi Li 004; Pinyan Liu; Gustavo G. Nascimento; Xinru Wang; Fabio Renato Manzolli Leite; Bibhas Chakraborty; Chuan Hong; Yilin Ning; Feng Xie 004; Zhen Ling Teo; Daniel Shu Wei Ting; Hamed Haddadi; et al. (J. Am. Medical Informatics Assoc., 2023)

Covariate Shift Corrected Conditional Randomization Test. - Bowen Xu; Yiwen Huang; Chuan Hong; Shuangning Li; Molei Liu (NeurIPS, 2024)

Foundation Model Makes Clustering a Better Initialization for Active Learning. - Han Yuan; Chuan Hong (CoRR, 2024)

Developing Federated Time-to-Event Scores Using Heterogeneous Real-World Survival Data. - Siqi Li 004; Yuqing Shang; Ziwen Wang; Qiming Wu 001; Chuan Hong; Yilin Ning; Di Miao; Marcus Eng Hock Ong; Bibhas Chakraborty; Nan Liu 003 (CoRR, 2024)

A tutorial on fairness in machine learning in healthcare. - Jianhui Gao; Benson Chou; Zachary R. McCaw; Hilary Thurston; Paul Varghese; Chuan Hong; Jessica L. Gronsbell (CoRR, 2024)

Retrieval-Augmented Generation for Generative Artificial Intelligence in Medicine. - Rui Yang 016; Yilin Ning; Emilia Keppo; Mingxuan Liu; Chuan Hong; Danielle S. Bitterman; Jasmine Chiat Ling Ong; Daniel Shu Wei Ting; Nan Liu 003 (CoRR, 2024)

Bridging Data Gaps in Healthcare: A Scoping Review of Transfer Learning in Biomedical Data Analysis. - Siqi Li 004; Xin Li 079; Kunyu Yu; Di Miao; Mingcheng Zhu 003; Mengying Yan; Yuhe Ke; Danny D'Agostino; Yilin Ning; Qiming Wu 001; Ziwen Wang; Yuqing Shang; et al. (CoRR, 2024)

FairFML: Fair Federated Machine Learning with a Case Study on Reducing Gender Disparities in Cardiac Arrest Outcome Prediction. - Siqi Li 004; Qiming Wu 001; Xin Li 079; Di Miao; Chuan Hong; Wenjun Gu; Yuqing Shang; Yohei Okada; Michael Hao Chen; Mengying Yan; Yilin Ning; Marcus Eng Hock Ong; et al. (CoRR, 2024)

Clinical domain knowledge-derived template improves post hoc AI explanations in pneumothorax classification. - Han Yuan; Chuan Hong; Pengtao Jiang; Gangming Zhao; Nguyen Tuan Anh Tran; Xinxing Xu; Yet Yen Yan; Nan Liu 003 (J. Biomed. Informatics, 2024)

Trans-Balance: Reducing demographic disparity for prediction models in the presence of class imbalance. - Chuan Hong; Molei Liu; Daniel Wojdyla; Jimmy Hickey; Michael J. Pencina; Ricardo Henao (J. Biomed. Informatics, 2024)

LATTE: Label-efficient incident phenotyping from longitudinal electronic health records. - Jun Wen; Jue Hou; Clara-Lea Bonzel; Yihan Zhao; Victor M. Castro; Vivian S. Gainer; Dana Weisenfeld; Tianrun Cai; Yuk-Lam Ho; Vidul Ayakulangara Panickan; Lauren Costa; Chuan Hong; et al. (Patterns, 2024)

Semi-supervised ROC analysis for reliable and streamlined evaluation of phenotyping algorithms. - Jianhui Gao; Clara-Lea Bonzel; Chuan Hong; Paul Varghese; Karim Zakir; Jessica L. Gronsbell (J. Am. Medical Informatics Assoc., 2024)

Predicting Partially Observed Long-Term Outcomes with Adversarial Positive-Unlabeled Domain Adaptation. - Mengying Yan; Meng Xia; Wei Angel Huang; Chuan Hong; Benjamin Goldstein 001; Matthew M. Engelhard (CHIL, 2025)

Application of unified health large language model evaluation framework to In-Basket message replies: bridging qualitative and quantitative assessments. - Chuan Hong; Anand Chowdhury; Anthony D. Sorrentino; Haoyuan Wang; Monica Agrawal; Armando Bedoya; Sophia Bessias; Nicoleta J. Economou-Zavlanos; Ian Wong; Christian Pean; Fan Li; Kathryn I. Pollak; et al. (J. Am. Medical Informatics Assoc., 2025)

ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis. - Ziming Gan; Doudou Zhou; Everett Neil Rush; Vidul Ayakulangara Panickan; Yuk-Lam Ho; George Ostrouchov; Zhiwei Xu; Shuting Shen; Xin Xiong; Kimberly F. Greco; Chuan Hong; Clara-Lea Bonzel; et al. (J. Biomed. Informatics, 2025)

FedIMPUTE: Privacy-preserving missing value imputation for multi-site heterogeneous electronic health records. - Siqi Li 004; Mengying Yan; Ruizhi Yuan; Molei Liu; Nan Liu 003; Chuan Hong (J. Biomed. Informatics, 2025)

DOME: Directional medical embedding vectors from Electronic Health Records. - Jun Wen; Hao Xue 005; Everett Neil Rush; Vidul Ayakulangara Panickan; Tianrun Cai; Doudou Zhou; Yuk-Lam Ho; Lauren Costa; Edmon Begoli; Chuan Hong; J. Michael Gaziano; Kelly Cho; et al. (J. Biomed. Informatics, 2025)

Label efficient phenotyping for Long COVID using electronic health records. - Chuan Hong; Jun Wen; Harrison G. Zhang; Vidul Ayakulangara Panickan; Doris Yang; Alicia W. Chen; Xin Xiong; Xuan Wang; Michele Morris; Sara Morini; Rahul Sangar; Andrew Dey; et al. (npj Digit. Medicine, 2025)

An evaluation framework for ambient digital scribing tools in clinical applications. - Haoyuan Wang; Rui Yang; Mahmoud Alwakeel; Ankit Kayastha; Anand Chowdhury; Joshua M. Biro; Anthony D. Sorrentino; Jessica L. Handley; Sarah Hantzmon; Sophia Bessias; Nicoleta J. Economou-Zavlanos; Armando Bedoya; et al. (npj Digit. Medicine, 2025)

Representation Learning to Advance Multi-institutional Studies with Electronic Health Record Data. - Doudou Zhou; Han Tong; Linshanshan Wang; Suqi Liu; Xin Xiong; Ziming Gan; Romain Griffier; Boris P. Hejblum; Yun-Chung Liu; Chuan Hong; Clara-Lea Bonzel; Tianrun Cai; et al. (CoRR, 2025)

Enabling Inclusive Systematic Reviews: Incorporating Preprint Articles with Large Language Model-Driven Evaluations. - Rui Yang 016; Jiayi Tong; Haoyuan Wang; Hui Huang; Ziyang Hu; Peiyu Li; Nan Liu 003; Christopher J. Lindsell; Michael J. Pencina; Yong Chen 016; Chuan Hong (CoRR, 2025)

SIM-Shapley: A Stable and Computationally Efficient Approach to Shapley Value Approximation. - Wangxuan Fan; Siqi Li 004; Doudou Zhou; Yohei Okada; Chuan Hong; Molei Liu; Nan Liu 003 (CoRR, 2025)

The Evolving Landscape of Generative Large Language Models and Traditional Natural Language Processing in Medicine. - Rui Yang 016; Huitao Li; Matthew Yu Heng Wong; Yuhe Ke; Xin Li 079; Kunyu Yu; Jingchi Liao; Jonathan Chong Kai Liew; Sabarinath Vinod Nair; Jasmine Chiat Ling Ong; Irene Li; Douglas Teodoro; et al. (CoRR, 2025)