DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning. - Peng Ni; Neng Huang; Zhi Zhang; De-Peng Wang; Fan Liang; Yu Miao; Chuan-Le Xiao; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2019)

A survey on de novo assembly methods for single-molecular sequencing. - Ying Chen; Chuan-Le Xiao (Quant. Biol., 2020)

NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data. - Neng Huang; Minghua Xu 005; Fan Nie; Peng Ni; Chuan-Le Xiao; Feng Luo 001; Jianxin Wang 001 (Bioinform., 2023)

DeepBAM: a high-accuracy single-molecule CpG methylation detection tool for Oxford nanopore sequencing. - Xin Bai; Hui-Cong Yao; Bo Wu; Luo-Ran Liu; Yu-Ying Ding; Chuan-Le Xiao (Briefings Bioinform., 2024)