Optimal speeding up of parallel algorithms based upon the divide-and-conquer strategy. - Chuan Yi Tang; Richard C. T. Lee (Inf. Sci., 1984)

On the complexity of some multi-attribute file design problems. - Chuan Yi Tang; D. J. Fuehrer; Richard C. T. Lee (Inf. Syst., 1985)

An Optimal Algorithm for Constructing Oriented Voronoi Diagrams and Geographic Neighborhood Graphs. - Maw-Shang Chang; Nen-Fu Huang; Chuan Yi Tang (Inf. Process. Lett., 1990)

A unified approach for solving bottleneck k-bipartition problems. - Maw-Shang Chang; Chuan Yi Tang; Richard C. T. Lee (ACM Conference on Computer Science, 1991)

Ranking Unranking and Parallel Enumerating of Topological Orders. - Bang Ye Wu; Chuan Yi Tang (ICPP (3), 1991)

An Average Case Analysis of Monien and Speckenmeyer's Mechanical Theorem Proving Algorithm. - T. H. Hu; Chuan Yi Tang; Richard C. T. Lee (ISA, 1991)

Covering convex rectilinear polygons in linear time. - W. T. Liou; Chuan Yi Tang; Richard C. T. Lee (Int. J. Comput. Geom. Appl., 1991)

Computing the Optimal IO Sequences of a Protocol in Polynomial Time. - Wen-Huei Chen; Chuan Yi Tang (Inf. Process. Lett., 1991)

Solving the Single Step Graph Searching Problem by Solving the Maximum Two-Independent Set Problem. - Ju Yuan Hsiao; Chuan Yi Tang; Ruay Shiung Chang (Inf. Process. Lett., 1991)

20-relative neighborhood graphs are hamiltonian. - Maw-Shang Chang; Chuan Yi Tang; Richard C. T. Lee (J. Graph Theory, 1991)

Solving the Euclidean Bottleneck Matching Problem by k-Relative Neighborhood Graphs. - Maw-Shang Chang; Chuan Yi Tang; Richard C. T. Lee (Algorithmica, 1992)

An Average Case Analysis of a Resolution Principle Algorithm in Mechanical Theorem Proving. - T. H. Hu; Chuan Yi Tang; Richard C. T. Lee (Ann. Math. Artif. Intell., 1992)

Solving the Euclidean Bottleneck Biconnected Edge Subgraph Problem by 2-Relative Neighborhood Graphs. - Maw-Shang Chang; Chuan Yi Tang; Richard C. T. Lee (Discret. Appl. Math., 1992)

An Efficient Algorithm for Finding a Maximum Weight 2-Independent Set on Interval Graphs. - Ju Yuan Hsiao; Chuan Yi Tang; Ruay Shiung Chang (Inf. Process. Lett., 1992)

Tightly-Synchronizable Protocol Test Generation Via the Duplex Technique. - Wen-Huei Chen; Chuan Yi Tang (J. Inf. Sci. Eng., 1992)

Using Conflicts to Derive Efficient Algorithms on the Single-Channel Broadcast Communication Model. - Chuan Yi Tang; Yuh Hann Liang (J. Inf. Sci. Eng., 1992)

A New Loop Partition Method-Clustering. - Shaw-Yen Tseng; Chung-Ta King; Chuan Yi Tang (Architectures and Compilation Techniques for Fine and Medium Grain Parallelism, 1993)

Minimum-Cost Synchronizable Test Sequence Generation via the DuplexU Digraph. - Wen-Huei Chen; Chuan Yi Tang; Hasan Ural (INFOCOM, 1993)

A 2.|E|-Bit Distributed Algorithm for the Directed Euler Trail Problem. - Wen-Huei Chen; Chuan Yi Tang (Inf. Process. Lett., 1993)

The Competitiveness of Randomized Algorithms for On-Line Steiner Tree and On-Line Spanning Tree Problems. - Ying Teh Tsai; Chuan Yi Tang (Inf. Process. Lett., 1993)

The summation and bottleneck minimization for single-step searching on weighted graphs. - Ju Yuan Hsiao; Chuan Yi Tang; Ruay Shiung Chang (Inf. Sci., 1993)

A Different Approach for Solving the Specified Diameter Partition Problem. - Chiou-Kuo Liang; Chuan Yi Tang; Richard C. T. Lee (J. Inf. Sci. Eng., 1993)

An Efficient Emulation for Tree-Connected Networks. - Daw-Jong Shyu; Biing-Feng Wang; Chuan Yi Tang (ICPADS, 1994)

Fast Algorithms for Simulating the CRCW Shared-Memory Computer on Reconfigurable Meshes. - Daw-Jong Shyu; Biing-Feng Wang; Chuan Yi Tang (ICPP (3), 1994)

Average Performance of a Greedy Algorithm for the On-Line Minimum Matching Problem on Euclidean Space. - Ying The Tsai; Chuan Yi Tang; Yunn Yen Chen (Inf. Process. Lett., 1994)

Single Step Searching in Weighted Block Graphs. - Ju Yuan Hsiao; Chuan Yi Tang; Ruay Shiung Chang; Richard C. T. Lee (Inf. Sci., 1994)

The emulation problem on trees. - Daw-Jong Shyu; Biing-Feng Wang; Chuan Yi Tang (IPPS, 1995)

Improving the UIOv-method for protocol conformance testing. - Wen-Huei Chen; Chuan Yi Tang; Son T. Vuong (Comput. Commun., 1995)

Randomized algorithms for the on-line minimum matching problem on euclidean space. - Ying Teh Tsai; Chuan Yi Tang; Yunn Yen Chen (Int. J. Comput. Math., 1995)

Profiling Dependence Vectors for Loop Parallelization. - Shaw-Yen Tseng; Chung-Ta King; Chuan Yi Tang (IPPS, 1996)

Graph Searching on Chordal Graphs. - Sheng-Lung Peng; Ming-Tat Ko; Chin-Wen Ho; Tsan-sheng Hsu; Chuan Yi Tang (ISAAC, 1996)

Effincient Domination of Permutation Graphs and Trapezoid Graphs. - Y. Daniel Liang; Chin Lung Lu; Chuan Yi Tang (COCOON, 1997)

A Linear-Time Algorithm for the Weighted Feedback Vertex Problem on Interval Graphs. - Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 1997)

An O(n) Algorithm for Finding an Optimal Position with Relative Distances in an Evolutionary Tree. - Bang Ye Wu; Chuan Yi Tang (Inf. Process. Lett., 1997)

An Average Case Analysis of the Branching Algorithm for Solving k-Satisfiability Problems. - Ying Teh Tsai; Chuan Yi Tang (CATS, 1998)

A Linear-Time Algorithm for Constructing an Optimal Node-Search Strategy of a Tree. - Sheng-Lung Peng; Chin-Wen Ho; Tsan-sheng Hsu; Ming-Tat Ko; Chuan Yi Tang (COCOON, 1998)

Synchronizable test sequence for multi-party protocol conformance testing. - Wen-Jer Wu; Wen-Huei Chen; Chuan Yi Tang (Comput. Commun., 1998)

Solving the Weighted Efficient Edge Domination Problem on Bipartite Permutation Graphs. - Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 1998)

Efficient Emulations for X-trees and /w-ary Trees. - Daw-Jong Shyu; Biing-Feng Wang; Chuan Yi Tang (Parallel Algorithms Appl., 1998)

Constructing Light Spanning Trees with Small Routing Cost. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (STACS, 1999)

An Efficient Algorithm for the Length-Constrained Heaviest Path Problem on a Tree. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (Inf. Process. Lett., 1999)

Approximation and Exact Algorithms for Constructing Minimum Ultrametric Trees from Distance Matrices. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (J. Comb. Optim., 1999)

A Polynomial-Time Approximation Scheme for Minimum Routing Cost Spanning Trees. - Bang Ye Wu; Giuseppe Lancia; Vineet Bafna; Kun-Mao Chao; R. Ravi 001; Chuan Yi Tang (SIAM J. Comput., 1999)

Automatic Test Timing Assignment for RAMs Using Linear Programming. - Wen-Jer Wu; Chuan Yi Tang (VLSI Design, 1999)

Memory test time reduction by interconnecting test items. - Wen-Jer Wu; Chuan Yi Tang (Asian Test Symposium, 2000)

Graph Searching on Some Subclasses of Chordal Graphs. - Sheng-Lung Peng; Chuan Yi Tang; Ming-Tat Ko; Chin-Wen Ho; Tsan-sheng Hsu (Algorithmica, 2000)

Approximation algorithms for the shortest total path length spanning tree problem. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (Discret. Appl. Math., 2000)

Approximation algorithms for some optimum communication spanning tree problems. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (Discret. Appl. Math., 2000)

Embedding cycles and meshes onto incomplete hypercubes. - Jywe-Fei Fang; Ju Yuan Hsiao; Chuan Yi Tang (Int. J. Comput. Math., 2000)

An efficient external sorting algorithm. - Fang-Cheng Leu; Yin-Te Tsai; Chuan Yi Tang (Inf. Process. Lett., 2000)

Guarding in a simple polygon. - Bor-Kuan Lu; Fang-Rong Hsu; Chuan Yi Tang (Inf. Process. Lett., 2000)

A Polynomial Time Approximation Scheme for Optimal Product-Requirement Communication Spanning Trees. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (J. Algorithms, 2000)

Edge and node searching problems on trees. - Sheng-Lung Peng; Chin-Wen Ho; Tsan-sheng Hsu; Ming-Tat Ko; Chuan Yi Tang (Theor. Comput. Sci., 2000)

A New Measure of Edit Distance between Labeled Trees. - Chin Lung Lu; Zheng-Yao Su; Chuan Yi Tang (COCOON, 2001)

An optimal external selection algorithm and its application in the Internet. - Fang-Cheng Leu; Chuang-Chun Chiou; Yin-Te Tsai; Chuan Yi Tang (ICC, 2001)

Finding the shortest boundary guard of a simple polygon. - Bor-Kuan Lu; Fang-Rong Hsu; Chuan Yi Tang (Theor. Comput. Sci., 2001)

A near-quadratic algorithm for the alpha-connected two-center decision problem. - Po-Hsueh Huang; Yin-Te Tsai; Chuan Yi Tang (CCCG, 2002)

The Full Steiner Tree Problem in Phylogeny. - Chin Lung Lu; Chuan Yi Tang; Richard Chia-Tung Lee (COCOON, 2002)

Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (CSB, 2002)

Perfect edge domination and efficient edge domination in graphs. - Chin Lung Lu; Ming-Tat Ko; Chuan Yi Tang (Discret. Appl. Math., 2002)

Weighted efficient domination problem on some perfect graphs. - Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 2002)

Light graphs with small routing cost. - Bang Ye Wu; Kun-Mao Chao; Chuan Yi Tang (Networks, 2002)

On the Full and Bottleneck Full Steiner Tree Problems. - Yen Hung Chen; Chin Lung Lu; Chuan Yi Tang (COCOON, 2003)

Identify Amino Acid Candidates Critical for Function of Rat Imidase by Cross-reference Voting in Imidase SuperFamily. - Chihan Lee; Ya-ting Lin; Chuan Yi Tang; Yuh-Shyong Yang (SAC, 2003)

A fast algorithm for the alpha-connected two-center decision problem. - Po-Hsueh Huang; Yin-Te Tsai; Chuan Yi Tang (Inf. Process. Lett., 2003)

Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (J. Bioinform. Comput. Biol., 2003)

Efficient minus and signed domination in graphs. - Chin Lung Lu; Sheng-Lung Peng; Chuan Yi Tang (Theor. Comput. Sci., 2003)

The full Steiner tree problem. - Chin Lung Lu; Chuan Yi Tang; Richard Chia-Tung Lee (Theor. Comput. Sci., 2003)

An Improved Algorithm for the Maximum Agreement Subtree Problem. - Chuan-Min Lee; Ling-Ju Hung; Maw-Shang Chang; Chuan Yi Tang (BIBE, 2004)

An IDC-based Algorithm for Efficient Homology Filtration with Guaranteed Seriate Coverage. - Hsiao Ping Lee; Yin-Te Tsai; Ching Hua Shih; Tzu Fang Sheu; Chuan Yi Tang (BIBE, 2004)

A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST Databases. - Hsiao Ping Lee; Tzu Fang Sheu; Yin-Te Tsai; Ching Hua Shih; Chuan Yi Tang (CSB, 2004)

Approximation Algorithms for k-Source Bottleneck Routing Cost Spanning Tree Problems. - Yen Hung Chen; Bang Ye Wu; Chuan Yi Tang (ICCSA (3), 2004)

The Development of RFID in Healthcare in Taiwan. - Frank Kuo; Yuehching Lee; Chuan Yi Tang (ICEB, 2004)

Modeling Signal Transduction of Neural System by Hybrid Petri Net Representation. - Shih Chi Peng; Hsu-Ming Chang; D. Hsu; Chuan Yi Tang (OR, 2004)

A seriate coverage filtration approach for homology search. - Hsiao Ping Lee; Yin-Te Tsai; Chuan Yi Tang (SAC, 2004)

Numerical Performance and Throughput Benchmark for Electronic Structure Calculations in PC-Linux Systems with New Architectures, Updated Compilers, and Libraries. - Jen-Shiang K. Yu; Jenn-Kang Hwang; Chuan Yi Tang; Chin-Hui Yu (J. Chem. Inf. Model., 2004)

Feature Selection and Combination Criteria for Improving Predictive Accuracy in Protein Structure Classification. - Chun-Yuan Lin; Ken-Li Lin; Chuen-Der Huang; Hsiu-Ming Chang 002; Chiao Yun Yang; Chin-Teng Lin; Chuan Yi Tang; D. Frank Hsu (BIBE, 2005)

Disjoint Segments with Maximum Density. - Yen Hung Chen; Hsueh-I Lu; Chuan Yi Tang (International Conference on Computational Science (2), 2005)

Comparative Exon Prediction based on Heuristic Coding Region Alignment. - Shu Ju Hsieh; Yun Sheng Chung; Chuan Yi Tang; Chun-Yuan Lin (ISPAN, 2005)

A Fast Technique for Constructing Evolutionary Tree with the Application of Compact Sets. - Kun-Ming Yu; Yu-Weir Chang; YaoHua Yang; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (PaCT, 2005)

EXONSCAN: EXON prediction with Signal detection and Coding region AligNment in homologous sequences. - Shu Ju Hsieh; Yun Sheng Chung; Chun-Yuan Lin; Chuan Yi Tang (SAC, 2005)

ROBIN: a tool for genome rearrangement of block-interchanges. - Chin Lung Lu; Tsui Ching Wang; Ying Chih Lin; Chuan Yi Tang (Bioinform., 2005)

An improved algorithm for the maximum agreement subtree problem. - Chuan-Min Lee; Ling-Ju Hung; Maw-Shang Chang; Chia-Ben Shen; Chuan Yi Tang (Inf. Process. Lett., 2005)

An Efficient Algorithm for Sorting by Block-Interchanges and Its Application to the Evolution of Vibrio Species. - Ying Chih Lin; Chin Lung Lu; Hwan-You Chang; Chuan Yi Tang (J. Comput. Biol., 2005)

An Efficient Parallel Algorithm for Ultrametric Tree Construction Based on 3PR. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (ISPA Workshops, 2006)

Comparative Gene Prediction Based on Gene Structure Conservation. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Chuan Yi Tang (PRIB, 2006)

BioPortal: A Portal for Deployment of Bioinformatics Applications on Cluster and Grid Environments. - Kuan-Ching Li; Chiou-Nan Chen; Tsung-Ying Wu; Chia-Hsien Wen; Chuan Yi Tang (VECPAR, 2006)

Exposing Phylogenetic Relationships by Genome Rearrangement. - Ying Chih Lin; Chuan Yi Tang (Adv. Comput., 2006)

A reinforced merging methodology for mapping unique peptide motifs in members of protein families. - Hao-Teng Chang; Tun-Wen Pai; Tan-Chi Fan; Bo-Han Su; Pei-Chih Wu; Chuan Yi Tang; Chun-Tien Chang; Shi-Hwei Liu; Margaret Dah-Tsyr Chang (BMC Bioinform., 2006)

Balancing minimum spanning trees and multiple-source minimum routing cost spanning trees on metric graphs. - Chung-Ming Lin; Yin-Te Tsai; Chuan Yi Tang (Inf. Process. Lett., 2006)

A Near-Quadratic Algorithm for the Alpha-Connected Two-Center Problem. - Po-Hsueh Huang; Yin-Te Tsai; Chuan Yi Tang (J. Inf. Sci. Eng., 2006)

GeneAlign: a coding exon prediction tool based on phylogenetical comparisons. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Wei Yuan Chow; Chuan Yi Tang (Nucleic Acids Res., 2006)

SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges. - Ying Chih Lin; Chin Lung Lu; Ying-Chuan Liu; Chuan Yi Tang (Nucleic Acids Res., 2006)

Approximation algorithms for some k-source shortest paths spanning tree problems. - Yen Hung Chen; Bang Ye Wu; Chuan Yi Tang (Networks, 2006)

Approximation Algorithms for 2-Source Minimum Routing Cost k -Tree Problems. - Yen Hung Chen; Gwo-Liang Liao; Chuan Yi Tang (ICCSA (3), 2007)

Efficient Parallel Algorithm for Optimal Three-Sequences Alignment. - Chun-Yuan Lin; Chen Tai Huang; Yeh-Ching Chung; Chuan Yi Tang (ICPP, 2007)

On the Diversity-Performance Relationship for Majority Voting in Classifier Ensembles. - Yun Sheng Chung; D. Frank Hsu; Chuan Yi Tang (MCS, 2007)

3-Points Relationship Based Parallel Algorithm for Minimum Ultrametric Tree Construction. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (PaCT, 2007)

Constrained sequence alignment: A general model and the hardness results. - Yun Sheng Chung; Chin Lung Lu; Chuan Yi Tang (Discret. Appl. Math., 2007)

Efficient algorithms for regular expression constrained sequence alignment. - Yun Sheng Chung; Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 2007)

Towards design of a nailfold capillary microscopy image analysis and diagnosis framework using grid technology. - Kuan-Ching Li; Chiou-Nan Chen; Tsu-Yi Hsieh; Chia-Hsien Wen; Joung-Liang Lan; Der-Yuan Chen; Chuan Yi Tang (J. High Speed Networks, 2007)

RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints. - Yun Sheng Chung; Wei-Hsun Lee; Chuan Yi Tang; Chin Lung Lu (Nucleic Acids Res., 2007)

Optimum Communication Spanning Trees. - Chuan Yi Tang; Kun-Mao Chao; Bang Ye Wu (Handbook of Approximation Algorithms and Metaheuristics, 2007)

Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (AINA Workshops, 2008)

Probe Selection with Fault Tolerance. - Sheng-Lung Peng; Yu-Wei Tsay; Tai-Chun Wang; Chuan Yi Tang (ICIC (1), 2008)

On the Relationships Among Various Diversity Measures in Multiple Classifier Systems. - Yun Sheng Chung; D. Frank Hsu; Chuan Yi Tang (ISPAN, 2008)

Extracting Alternative Splicing Information from Captions and Abstracts Using Natural Language Processing. - Chia Yang Cheng; Fang-Rong Hsu; Chuan Yi Tang (SUTC, 2008)

An improved algorithm for finding a length-constrained maximum-density subtree in a tree. - Hsin-Hao Su; Chin Lung Lu; Chuan Yi Tang (Inf. Process. Lett., 2008)

Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding Modules. - Wei-Yao Chou; Shu-Chuan Lin; Rong-Yuan Huang; Ting-Ying Jiang; Chien-Jung Chen; Chia-Mao Wu; Chuan Yi Tang; Margaret Dah-Tsyr Chang; Wei-I Chou; Hao-Teng Chang (BIBM, 2009)

Parallel branch-and-bound approach with MPI technology in inferring chemical compounds with path frequency. - Kun-Ming Yu; Chun-Yuan Lin; Hui-Yuan Wang; Chuan Yi Tang; Jiayi Zhou (GrC, 2009)

CAPS Genomic Subtyping on Orthomyxoviridae. - Sheng-Lung Peng; Yu-Wei Tsay; Chich-Sheng Lin; Chuan Yi Tang (ICIC (1), 2009)

A Parallel Algorithm for Three-Profile Alignment Method. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (IJCBS, 2009)

Chemical Compounds with Path Frequency Using Multi-Core Technology. - Kun-Ming Yu; Yi-Yan Chang; Jiayi Zhou; Chun-Yuan Huang; Whei-meih Chang; Chun-Yuan Lin; Chuan Yi Tang (Infoscale, 2009)

Efficient parallel branch-and-bound algorithm for constructing minimum ultrametric trees. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (J. Parallel Distributed Comput., 2009)

CORAL-M: Heuristic coding region alignment method for multiple genome sequences. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (BIBM Workshops, 2010)

A re-sequencing tool for high mismatch-tolerant short read alignment based on Burrows-Wheeler Transform. - Chen Hua Lu; Chun-Yuan Lin; Chuan Yi Tang (BIBM Workshops, 2010)

Develop integration modeling approach for discovery neuraminidase inhibitors in silico based on pharmacophore and CoMSIA models. - Kuei-Chung Shih; Chun-Yuan Lin; Jiayi Zhou; Shih-Han Huang; Chuan Yi Tang (BIBM Workshops, 2010)

Balanced Multi-process Parallel Algorithm for Chemical Compound Inference with Given Path Frequencies. - Jiayi Zhou; Kun-Ming Yu; Chun-Yuan Lin; Kuei-Chung Shih; Chuan Yi Tang (ICA3PP (2), 2010)

An incremental algorithm for efficient unique signature discoveries on DNA databases. - Hsiao Ping Lee; Tzu-Fang Sheu; Chuan Yi Tang (SAC, 2010)

Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules. - Wei-Yao Chou; Wei-I Chou; Tun-Wen Pai; Shu-Chuan Lin; Ting-Ying Jiang; Chuan Yi Tang; Margaret Dah-Tsyr Chang (Bioinform., 2010)

A parallel and incremental algorithm for efficient unique signature discovery on DNA databases. - Hsiao Ping Lee; Tzu-Fang Sheu; Chuan Yi Tang (BMC Bioinform., 2010)

Computational modeling with forward and reverse engineering links signaling network and genomic regulatory responses: NF-kappaB signaling-induced gene expression responses in inflammation. - Shih Chi Peng; David Shan-Hill Wong; Kai Che Tung; Yan Yu Chen; Chun Cheih Chao; Chien Hua Peng; Yung-Jen Chuang; Chuan Yi Tang (BMC Bioinform., 2010)

An improved algorithm for sorting by block-interchanges based on permutation groups. - Yen-Lin Huang; Cheng-Chen Huang; Chuan Yi Tang; Chin Lung Lu (Inf. Process. Lett., 2010)

On the bottleneck tree alignment problems. - Yen Hung Chen; Chuan Yi Tang (Inf. Sci., 2010)

SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations. - Yen-Lin Huang; Chen-Cheng Huang; Chuan Yi Tang; Chin Lung Lu (Nucleic Acids Res., 2010)

CUDA-FRESCO: Frequency-Based RE-Sequencing Tool Based on CO-clustering Segmentation by GPU. - Chun-Yuan Lin; Chuan Yi Tang; Sheng-Ta Li; Yaw-Ling Lin; Che-Lun Hung (HPCC, 2011)

A novel method to identify cooperative functional modules: study of module coordination in the Saccharomyces cerevisiae cell cycle. - Jeh-Ting Hsu; Chien Hua Peng; Wen-Ping Hsieh; Chung-Yu Lan; Chuan Yi Tang (BMC Bioinform., 2011)

A genetic algorithm-based boolean delay model of intracellular signal transduction in inflammation. - Chu Kang; Yung-Jen Chuang; Kai Che Tung; Chun Chao; Chuan Yi Tang; Shih Chi Peng; David Shan-Hill Wong (BMC Bioinform., 2011)

Multiple genome sequences alignment algorithm based on coding regions. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (Int. J. Comput. Biol. Drug Des., 2011)

Development of Novel 3D-QSAR Combination Approach for Screening and Optimizing B-Raf Inhibitors in silico. - Kuei-Chung Shih; Chun-Yuan Lin; Jiayi Zhou; Hsiao-Chieh Chi; Ting-Shou Chen; Chun-Chung Wang; Hsiang-Wen Tseng; Chuan Yi Tang (J. Chem. Inf. Model., 2011)

Simpute: A Simple Genotype Imputation Method. - Yen Jen Lin; Chun-Tien Chang; Chuan Yi Tang; Wen-Ping Hsieh (CISIS, 2012)

Parallel Shellsort Algorithm for Many-Core GPUs with CUDA. - Chun-Yuan Lin; Wei Sheng Lee; Chuan Yi Tang (Int. J. Grid High Perform. Comput., 2012)

Design of Novel FLT-3 Inhibitors Based on Dual-Layer 3D-QSAR Model and Fragment-Based Compounds in Silico. - Kuei-Chung Shih; Chun-Yuan Lin; Hsiao-Chieh Chi; Chrong-Shiong Hwang; Ting-Shou Chen; Chuan Yi Tang; Naiwan Hsiao (J. Chem. Inf. Model., 2012)

Reconstruction of phyletic trees by global alignment of multiple metabolic networks. - Cheng-Yu Ma; Shu-Hsi Lin; Chi-Ching Lee; Chuan Yi Tang; Bonnie Berger; Chung-Shou Liao (BMC Bioinform., 2013)

Comparing System Selection Methods for the Combinatorial Fusion of Multiple Retrieval Systems. - Chun-Yi Liu 004; Chuan Yi Tang; D. Frank Hsu (J. Interconnect. Networks, 2013)

Drug resistance gene identification algorithm for next-generation sequencing data. - Guan-Jie Hua; Chuan Yi Tang; Che-Lun Hung; Huiru Zheng (BIBM, 2014)

Development of 3D-QSAR combination approach for discovering and analysing neuraminidase inhibitors in silico. - Chun-Yuan Lin; Hsiao-Chieh Chi; Kuei-Chung Shih; Jiayi Zhou; Naiwan Hsiao; Chuan Yi Tang (Int. J. Data Min. Bioinform., 2014)

Editorial. - Tetsuo Shibuya; Chuan Yi Tang; Paul Horton; Kiyoshi Asai (J. Bioinform. Comput. Biol., 2014)

Cloud computing service framework for bioinformatics tools. - Guan-Jie Hua; Chuan Yi Tang; Che-Lun Hung; Yaw-Ling Lin (BIBM, 2015)

Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014). - Tetsuo Shibuya; Chuan Yi Tang; Paul Horton; Kiyoshi Asai (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

A simple algorithm for identifying integrons and gene cassettes in bacteria on next generation sequencing data. - Guan-Jie Hua; Che-Lun Hung; Chuan Yi Tang; Huiru Zheng (Int. J. Data Min. Bioinform., 2016)

Bioinformatics tools with deep learning based on GPU. - Che-Lun Hung; Chuan Yi Tang (BIBM, 2017)

Optimum Communication Spanning Trees. - Bang Ye Wu; Chuan Yi Tang; Kun-Mao Chao (Handbook of Approximation Algorithms and Metaheuristics (2), 2018)

Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse Images. - Hui-Jun Cheng; Chun-Yuan Lin; Cheng-Xian Wu; Che-Lun Hung; Wei-Hsiang Chen; Chuan Yi Tang (BIBM, 2018)

Chronic Kidney Disease Survival Prediction with Artificial Neural Networks. - Hanyu Zhang; Che-Lun Hung; William Cheng-Chung Chu; Ping-Fang Chiu; Chuan Yi Tang (BIBM, 2018)

Performance of Convolution Neural Network based on Multiple GPUs with Different Data Communication Models. - Che-Lun Hung; Yi-Yang Lin; Chuan Yi Tang; Chilung Wang; Ming-Chiang Chen (SNPD, 2018)

A Review of Deep Learning in Computer-Aided Drug Design. - Chih-Hung Chang; Che-Lun Hung; Chuan Yi Tang (BIBM, 2019)

Optimization of GPU Memory Usage for Training Deep Neural Networks. - Che-Lun Hung; Chine-fu Hsin; Hsiao-Hsi Wang; Chuan Yi Tang (I-SPAN, 2019)

MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations. - Ki-Hok Liao; Wing-Kai Hon; Chuan Yi Tang; Wen-Ping Hsieh (Bioinform., 2019)

Clover: a clustering-oriented de novo assembler for Illumina sequences. - Ming-Feng Hsieh; Chin Lung Lu; Chuan Yi Tang (BMC Bioinform., 2020)

An image authentication and recovery scheme based on turtle Shell algorithm and AMBTC-compression. - Chia-Chen Lin 001; Xiaolong Liu 001; Jianjie Zhou; Chuan Yi Tang (Multim. Tools Appl., 2022)