Locally Manifold Non-negative Matrix Factorization Based on Centroid for scRNA-seq Data Analysis. - Chuan-Yuan Wang; Ying-Lian Gao; Cui-Na Jiao; Jin-Xing Liu 001; Chunhou Zheng 001; Xiang-Zhen Kong (BIBM, 2020)

Adaptive Total Variation Constraint Hypergraph Regularized NMF and Its Application on Single-Cell RNA-Seq Data. - Ya-li Zhu; Ming-Juan Wu; Chuan-Yuan Wang; Yue Hu; Jin-Xing Liu 001 (BIC-TA, 2020)

Sparse robust graph-regularized non-negative matrix factorization based on correntropy. - Chuan-Yuan Wang; Ying-Lian Gao; Jin-Xing Liu 001; Ling-Yun Dai; Junliang Shang (J. Bioinform. Comput. Biol., 2021)

Dual Hyper-Graph Regularized Supervised NMF for Selecting Differentially Expressed Genes and Tumor Classification. - Chuan-Yuan Wang; Na Yu; Ming-Juan Wu; Ying-Lian Gao; Jin-Xing Liu 001; Juan Wang 003 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Adaptive total variation constraint hypergraph regularized NMF for single-cell RNA-seq data analysis. - Ya-li Zhu; Xiao-ning Zhang; Chuan-Yuan Wang; Jin-Xing Liu 001; Xiangzhen Kong (Quant. Biol., 2021)

Single-Cell RNA Sequencing Data Clustering by Low-Rank Subspace Ensemble Framework. - Chuan-Yuan Wang; Ying-Lian Gao; Jin-Xing Liu 001; Xiang-Zhen Kong; Chun-Hou Zheng 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Unsupervised Cluster Analysis and Gene Marker Extraction of scRNA-seq Data Based On Non-Negative Matrix Factorization. - Chuan-Yuan Wang; Ying-Lian Gao; Xiang-Zhen Kong; Jin-Xing Liu 001; Chun-Hou Zheng 001 (IEEE J. Biomed. Health Informatics, 2022)

Evaluating Gene Regulatory Network Activity From Dynamic Expression Data by Regularized Constraint Programming. - Chuan-Yuan Wang; Shiyu Xu; Zhi-Ping Liu (IEEE J. Biomed. Health Informatics, 2022)

Multi-objective Optimization-Based Approach for Detection of Breast Cancer Biomarkers. - Jiaxin Yang; Chuan-Yuan Wang; Duanchen Sun; Zhi-Ping Liu (ICIC (3), 2023)

ActivePPI: quantifying protein-protein interaction network activity with Markov random fields. - Chuan-Yuan Wang; Shiyu Xu; Duanchen Sun; Zhi-Ping Liu (Bioinform., 2023)

Network Activity Evaluation Reveals Significant Gene Regulatory Architectures During SARS-CoV-2 Viral Infection From Dynamic scRNA-seq Data. - Chuan-Yuan Wang; Zhi-Ping Liu (IEEE J. Biomed. Health Informatics, 2024)