Genes and (Common) Pathways Underlying Drug Addiction. - Chuan-Yun Li; Xizeng Mao; Liping Wei (PLoS Comput. Biol., 2008)

OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. - Chuan-Yun Li; Qing-Rong Liu; Ping-Wu Zhang; Xiao-Mo Li; Liping Wei; George R. Uhl (Nucleic Acids Res., 2009)

A Human-Specific De Novo Protein-Coding Gene Associated with Human Brain Functions. - Chuan-Yun Li; Yong Zhang; Zhanbo Wang; Yan Zhang; Chunmei Cao; Ping-Wu Zhang; Shu-Juan Lu; Xiao-Mo Li; Quan Yu; Xiaofeng Zheng; Quan Du; George R. Uhl; et al. (PLoS Comput. Biol., 2010)

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. - Chen Xie; Xizeng Mao; Jiaju Huang; Yang Ding; Jianmin Wu; Shan Dong; Lei Kong; Ge Gao; Chuan-Yun Li; Liping Wei (Nucleic Acids Res., 2011)

RhesusBase: a knowledgebase for the monkey research community. - Shi-Jian Zhang; Chu-Jun Liu; Mingming Shi; Lei Kong; Jia-Yu Chen; Wei-Zhen Zhou; Xiaotong Zhu; Peng Yu; Jue Wang; Xinzhuang Yang; Ning Hou; Zhi-Qiang Ye; et al. (Nucleic Acids Res., 2013)

The BioMart community portal: an innovative alternative to large, centralized data repositories. - Damian Smedley; Syed Haider; Steffen Durinck; Luca Pandini; Paolo Provero; James E. Allen; Olivier Arnaiz; Mohammad Hamza Awedh; Richard A. Baldock; Giulia Barbiera; Philippe Bardou; Tim Beck; et al. (Nucleic Acids Res., 2015)

Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure. - Yumei Li 010; Qing Sunny Shen; Qi Peng; Wanqiu Ding; Jie Zhang 105; Xiaoming Zhong; Ni A. An; Mingjun Ji; Wei-Zhen Zhou; Chuan-Yun Li (Briefings Bioinform., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

CHDbase: A Comprehensive Knowledgebase for Congenital Heart Disease-related Genes and Clinical Manifestations. - Wei-Zhen Zhou; Wenke Li; Huayan Shen; Ruby W. Wang; Wen Chen; Yujing Zhang; Qingyi Zeng; Hao Wang 168; Meng Yuan; Ziyi Zeng; Jinhui Cui; Chuan-Yun Li; et al. (Genom. Proteom. Bioinform., 2023)

STellaris: a web server for accurate spatial mapping of single cells based on spatial transcriptomics data. - Xiangshang Li; Chunfu Xiao; Juntian Qi; Weizhen Xue; Xinwei Xu; Zelin Mu; Jie Zhang 105; Chuan-Yun Li; Wanqiu Ding (Nucleic Acids Res., 2023)

Long-range alternative splicing contributes to neoantigen specificity in glioblastoma. - Mingjun Ji; Qing Yu; Xinzhuang Yang; Xianhong Yu; Jiaxin Wang; Chunfu Xiao; Ni A. An; Chuanhui Han; Chuan-Yun Li; Wanqiu Ding (Briefings Bioinform., 2024)

Interpretable niche-based cell‒cell communication inference using multi-view graph neural networks. - Juntian Qi; Zhengchao Luo; Chuan-Yun Li; Jinzhuo Wang; Wanqiu Ding (Nat. Comput. Sci., 2025)