An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale. - Qin Ma 003; Bingqiang Liu; Chuan Zhou 009; Yanbin Yin; Guojun Li; Ying Xu 001 (Bioinform., 2013)

DMINDA: an integrated web server for DNA motif identification and analyses. - Qin Ma 003; Hanyuan Zhang; Xizeng Mao; Chuan Zhou 009; Bingqiang Liu; Xin Chen; Ying Xu 001 (Nucleic Acids Res., 2014)

DOOR 2.0: presenting operons and their functions through dynamic and integrated views. - Xizeng Mao; Qin Ma 003; Chuan Zhou 009; Xin Chen; Hanyuan Zhang; Jincai Yang; Fenglou Mao; Wei Lai; Ying Xu 001 (Nucleic Acids Res., 2014)