Scalable Coarse Grained Parallel Interval Graph Algorithms. - Xin He; Chun-Hsi Huang (PDPTA, 2000)

Communication Efficient Coarse-Grained Parallel Algorithm for All Nearest Smaller Values Problem and its Applications. - Chun-Hsi Huang; Xin He (PDPTA, 2000)

Parallel Range Searching in Large Databases Based on General Parallel Prefix Computation. - Chun-Hsi Huang; Xin He (PP, 2001)

Communication-Efficient Bulk Synchronous Parallel Algorithm for Parentheses Matching. - Chun-Hsi Huang; Xin He (PP, 2001)

Finding a hamiltonian paths in tournaments on clusters - a provably communication-efficient approach. - Chun-Hsi Huang; Xin He 005 (SAC, 2001)

Communication Efficient BSP Algorithm for All Nearest Smaller Values Problem. - Xin He 005; Chun-Hsi Huang (J. Parallel Distributed Comput., 2001)

Parallel Pattern Identification in Biological Sequences on Clusters. - Chun-Hsi Huang; Ratnabali Biswas (CLUSTER, 2002)

Average-Case Communication-Optimal Parallel Parenthesis Matching. - Chun-Hsi Huang; Xin He 005 (ISAAC, 2002)

Grid-enabled parallel divide-and-conquer: theory and practice. - Chun-Hsi Huang (SAC, 2002)

Finding Double Euler Trails of Planar Graphs in Linear Time. - Zhi-Zhong Chen; Xin He 005; Chun-Hsi Huang (SIAM J. Comput., 2002)

TROJAN: A Scalable Distributed Semantic Network System. - Chain-Wu Lee; Chun-Hsi Huang; Sanguthevar Rajasekaran (ICTAI, 2003)

Distributed Path-Based Inference in Semantic Networks. - Chain-Wu Lee; Laurence Tianruo Yang; Chun-Hsi Huang; Sanguthevar Rajasekaran; D. Frank Hsu (ISPAN, 2004)

A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment. - Sanguthevar Rajasekaran; Vishal Thapar; Hardik Dave; Chun-Hsi Huang (KELSI, 2004)

High-performance parallel bio-computing. - Chun-Hsi Huang; Sanguthevar Rajasekaran (Parallel Comput., 2004)

Toward cooperative genomic knowledge inference. - Chain-Wu Lee; Chun-Hsi Huang (Parallel Comput., 2004)

Distributed Path-Based Inference in Semantic Networks. - Chain-Wu Lee; Chun-Hsi Huang; Laurence Tianruo Yang; Sanguthevar Rajasekaran (J. Supercomput., 2004)

Exact algorithms for planted motif challenge problems. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang (APBC, 2005)

Exact algorithms for motif search. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang; Vishal Thapar; Michael R. Gryk; Mark W. Maciejewski; Martin R. Schiller (APBC, 2005)

BioGrid- bridging life science and information technology. - Chun-Hsi Huang; Sanguthevar Rajasekaran (CCGRID, 2005)

Exact Algorithms for Planted Motif Problems. - Sanguthevar Rajasekaran; Sudha Balla; Chun-Hsi Huang (J. Comput. Biol., 2005)

A Heuristic Approach to Scoring Gene Clustering Algorithms. - Longde Yin; Chun-Hsi Huang (BIOCOMP, 2006)

An analysis of the effects of spatial locality on the cache performance of binary search trees. - Thomas B. Puzak; Chun-Hsi Huang (ICSOFT (2), 2006)

Clustering of Gene Expression Data: Performance and Similarity Analysis. - Longde Yin; Chun-Hsi Huang (IMSCCS (1), 2006)

Clustering of gene expression data: performance and similarity analysis. - Longde Yin; Chun-Hsi Huang; Jun Ni (BMC Bioinform., 2006)

Finding Hamiltonian paths in tournaments on clusters. - Chun-Hsi Huang; Sanguthevar Rajasekaran; Laurence Tianruo Yang; Xin He 005 (Clust. Comput., 2006)

Communication-optimal parallel parenthesis matching. - Chun-Hsi Huang; Xin He 005; Min Qian (Parallel Comput., 2006)

Towards On-Demand Biomedical Knowledge Extraction. - Vincenzo Lanza; M. Ignazia Cascio; Chun-Hsi Huang (HEALTHINF (1), 2008)

Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid. - Chun-Hsi Huang; Akihiko Konagaya; Vincenzo Lanza; Peter M. A. Sloot (IEEE Trans. Inf. Technol. Biomed., 2008)

PCA-based population structure inference with generic clustering algorithms. - Chih Lee; Ali Abdool; Chun-Hsi Huang (BMC Bioinform., 2009)

Biological data classifications with LDA and SPRT. - Brittany Nkounkou; Chih Lee; Chun-Hsi Huang; Colin Brown (BIBM Workshops, 2010)

Optimized Data Migration within a Medical Grid. - Jared Christopherson; Chun-Hsi Huang (HEALTHINF, 2010)

Structural Motif Enumeration in Transcriptional Regulation Networks. - Claire Luciano; Chun-Hsi Huang (BIOINFORMATICS, 2010)

Geometric visualization of TF binding sites in context. - Chih Lee; Chun-Hsi Huang (BCB, 2011)

ML-Consensus: A General Consensus Model for Variable-Length Transcription Factor Binding Sites. - Saad Quader; Nathan Snyder; Kevin Su; Ericka Mochan; Chun-Hsi Huang (EvoBio, 2011)

Ensemble learning algorithms for classification of mtDNA into haplogroups. - Carol Wong; Yuran Li; Chih Lee; Chun-Hsi Huang (Briefings Bioinform., 2011)

Biological network motif detection: principles and practice. - Elisabeth Wong; Brittany A. Baur; Saad Quader; Chun-Hsi Huang (Briefings Bioinform., 2012)

Searching for transcription factor binding sites in vector spaces. - Chih Lee; Chun-Hsi Huang (BMC Bioinform., 2012)

LASAGNA: A novel algorithm for transcription factor binding site alignment. - Chih Lee; Chun-Hsi Huang (BMC Bioinform., 2013)

Mapping visual signal processing onto multi-core platform via algorithm/architecture co-exploration. - Chun-Fu Chen 001; Gwo Giun Chris Lee; Zheng-Han Yu; Chun-Hsi Huang (SiPS, 2014)

LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser. - Chih Lee; Chun-Hsi Huang (Bioinform., 2014)

Reconfigurable filter bank design via principal component analysis and low rank approximation. - Chun-Hsi Huang; Gwo Giun Chris Lee; Chun-Fu (Richard) Chen; Yinglong Xia; Ching-Yung Lin (GlobalSIP, 2015)

Accelerating higher-order masking of AES using composite field and SIMD. - Abdulaziz Miyajan; Zhijie Shi; Chun-Hsi Huang; Turki F. Al-Somani (ISSPIT, 2015)

Current innovations and future challenges of network motif detection. - Ngoc Tam L. Tran; Sominder Mohan; Zhuoqing Xu; Chun-Hsi Huang (Briefings Bioinform., 2015)

On SDN-based extreme-scale networks. - Haitham Ghalwash; Chun-Hsi Huang (HPEC, 2016)

ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure. - Anas Al-Okaily; Chun-Hsi Huang (J. Comput. Biol., 2016)

Reconfigurable Interpolation Architecture for Multistandard Video Decoding. - Gwo Giun Lee; Tzu-Chiang Tai; Wei-Chiao Yang; Chun-Fu Chen 001; Chun-Hsi Huang (J. Signal Process. Syst., 2016)

Software-defined extreme scale networks for bigdata applications. - Haitham Ghalwash; Chun-Hsi Huang (HPEC, 2017)

Toward a Better Compression for DNA Sequences Using Huffman Encoding. - Anas Al-Okaily; Badar Almarri; Sultan Al Yami; Chun-Hsi Huang (J. Comput. Biol., 2017)

Cloud-based MOTIFSIM: Detecting Similarity in Large DNA Motif Data Sets. - Ngoc Tam L. Tran; Chun-Hsi Huang (J. Comput. Biol., 2017)

MOTIFSIM 2.1: An Enhanced Software Platform for Detecting Similarity in Multiple DNA Motif Data Sets. - Ngoc Tam L. Tran; Chun-Hsi Huang (J. Comput. Biol., 2017)

REU Site: Bio-Grid Initiatives for interdisciplinary research and education. - Chun-Hsi Huang (J. Parallel Distributed Comput., 2017)

Complexity-Aware Gabor Filter Bank Architecture Using Principal Component Analysis. - Gwo Giun Chris Lee; Chun-Hsi Huang; Chun-Fu (Richard) Chen; Tai-Ping Wang (J. Signal Process. Syst., 2017)

Simultaneous EEG Analysis and Feature Extraction Selection Based on Unsupervised Learning. - Badar Almarri; Chun-Hsi Huang (BI, 2018)

A QoS Framework for SDN-Based Networks. - Haitham Ghalwash; Chun-Hsi Huang (CIC, 2018)

A Locality-Aware, Energy-Efficient Cache Design for Large-Scale Multi-Core Systems. - Abdulrahman Alshegaifi; Chun-Hsi Huang (iThings/GreenCom/CPSCom/SmartData, 2018)

Top-Down Indoor Localization with Wi-Fi Fingerprints Using Deep Q-Network. - Fei Dou; Jin Lu 001; Zigeng Wang; Xia Xiao; Jinbo Bi; Chun-Hsi Huang (MASS, 2018)

Neuroimaging Subjective Labeling Dichotomization and Class Imbalance Alleviation. - Badar A. Almarri; Chun-Hsi Huang (NER, 2019)

Unsupervised Similarity-based Sensor Selection for Time Series Data. - Badar Almarri; Sanguthevar Rajasekaran; Chun-Hsi Huang (UEMCON, 2019)

A congestion control mechanism for SDN-based fat-tree networks. - Haitham Ghalwash; Chun-Hsi Huang (HPEC, 2020)

Nongreedy Unbalanced Huffman Tree Compressor for Single and Multifasta Files. - Sultan Alyami; Chun-Hsi Huang (J. Comput. Biol., 2020)

A Bisection Reinforcement Learning Approach to 3-D Indoor Localization. - Fei Dou; Jin Lu 001; Tingyang Xu; Chun-Hsi Huang; Jinbo Bi (IEEE Internet Things J., 2021)