Genetic Architect: Discovering Genomic Structure with Learned Neural Architectures. - Laura Deming; Sasha Targ; Nate Sauder; Diogo Almeida; Chun Jimmie Ye (CoRR, 2016)

CloudPred: Predicting Patient Phenotypes From Single-cell RNA-seq. - Bryan He; Matthew Thomson 001; Meena Subramaniam; Richard Perez; Chun Jimmie Ye; James Zou (CoRR, 2021)

SingleQ: a comprehensive database of single-cell expression quantitative trait loci (sc-eQTLs) cross human tissues. - Zhiwei Zhou; Jingyi Du; Jianhua Wang; Liangyi Liu; M. Gracie Gordon; Chun Jimmie Ye; Joseph E. Powell; Mulin Jun Li; Shuquan Rao (Database J. Biol. Databases Curation, 2024)