Fault Tolerant Token Ring Embedding in Double Loop Networks. - Ting-Yi Sung; Chun-Yuan Lin; Yen-Chu Chuang; Lih-Hsing Hsu (Inf. Process. Lett., 1998)

Efficient Data Compression Methods for Multi-Dimensional Sparse Array Operations. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (CW, 2002)

Data Distribution Schemes of Sparse Arrays on Distributed Memory Multicomputers. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (ICPP Workshops, 2002)

Efficient Representation Scheme for Multidimensional Array Operations. - Chun-Yuan Lin; Jen-Shiuh Liu; Yeh-Ching Chung (IEEE Trans. Computers, 2002)

Efficient Data Compression Methods for Multidimensional Sparse Array Operations Based on the EKMR Scheme. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (IEEE Trans. Computers, 2003)

Efficient Data Parallel Algorithms for Multidimensional Array Operations Based on the EKMR Scheme for Distributed Memory Multicomputers. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (IEEE Trans. Parallel Distributed Syst., 2003)

Performance Evaluation of Data Distributions with Load-Balancing for Sparse Arrays. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (ISPAN, 2004)

Feature Selection and Combination Criteria for Improving Predictive Accuracy in Protein Structure Classification. - Chun-Yuan Lin; Ken-Li Lin; Chuen-Der Huang; Hsiu-Ming Chang 002; Chiao Yun Yang; Chin-Teng Lin; Chuan Yi Tang; D. Frank Hsu (BIBE, 2005)

Fast packet classification using bit compression. - Chia-Jen Hsu; Chien Chen; Chun-Yuan Lin (GLOBECOM, 2005)

Comparative Exon Prediction based on Heuristic Coding Region Alignment. - Shu Ju Hsieh; Yun Sheng Chung; Chuan Yi Tang; Chun-Yuan Lin (ISPAN, 2005)

A Fast Technique for Constructing Evolutionary Tree with the Application of Compact Sets. - Kun-Ming Yu; Yu-Weir Chang; YaoHua Yang; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (PaCT, 2005)

EXONSCAN: EXON prediction with Signal detection and Coding region AligNment in homologous sequences. - Shu Ju Hsieh; Yun Sheng Chung; Chun-Yuan Lin; Chuan Yi Tang (SAC, 2005)

Efficient Data Distribution Schemes for EKMR-Based Sparse Arrays on Distributed Memory Multicomputers. - Chun-Yuan Lin; Yeh-Ching Chung; Jen-Shiuh Liu (J. Supercomput., 2005)

An Efficient Parallel Algorithm for Ultrametric Tree Construction Based on 3PR. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (ISPA Workshops, 2006)

Comparative Gene Prediction Based on Gene Structure Conservation. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Chuan Yi Tang (PRIB, 2006)

GeneAlign: a coding exon prediction tool based on phylogenetical comparisons. - Shu Ju Hsieh; Chun-Yuan Lin; Ning Han Liu; Wei Yuan Chow; Chuan Yi Tang (Nucleic Acids Res., 2006)

Efficient Parallel Algorithm for Optimal Three-Sequences Alignment. - Chun-Yuan Lin; Chen Tai Huang; Yeh-Ching Chung; Chuan Yi Tang (ICPP, 2007)

3-Points Relationship Based Parallel Algorithm for Minimum Ultrametric Tree Construction. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (PaCT, 2007)

Efficient Data Distribution Scheme for Multi-Dimensional Sparse Arrays. - Chun-Yuan Lin; Yeh-Ching Chung (J. Inf. Sci. Eng., 2007)

Data distribution schemes of sparse arrays on distributed memory multicomputers. - Chun-Yuan Lin; Yeh-Ching Chung (J. Supercomput., 2007)

Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (AINA Workshops, 2008)

Parallel branch-and-bound approach with MPI technology in inferring chemical compounds with path frequency. - Kun-Ming Yu; Chun-Yuan Lin; Hui-Yuan Wang; Chuan Yi Tang; Jiayi Zhou (GrC, 2009)

A Parallel Algorithm for Three-Profile Alignment Method. - Che-Lun Hung; Chun-Yuan Lin; Yeh-Ching Chung; Chuan Yi Tang (IJCBS, 2009)

Chemical Compounds with Path Frequency Using Multi-Core Technology. - Kun-Ming Yu; Yi-Yan Chang; Jiayi Zhou; Chun-Yuan Huang; Whei-meih Chang; Chun-Yuan Lin; Chuan Yi Tang (Infoscale, 2009)

Sorting by reversals and block-interchanges with various weight assignments. - Ying Chih Lin; Chun-Yuan Lin; Chunhung Richard Lin (BMC Bioinform., 2009)

Efficient parallel branch-and-bound algorithm for constructing minimum ultrametric trees. - Kun-Ming Yu; Jiayi Zhou; Chun-Yuan Lin; Chuan Yi Tang (J. Parallel Distributed Comput., 2009)

CORAL-M: Heuristic coding region alignment method for multiple genome sequences. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (BIBM Workshops, 2010)

A re-sequencing tool for high mismatch-tolerant short read alignment based on Burrows-Wheeler Transform. - Chen Hua Lu; Chun-Yuan Lin; Chuan Yi Tang (BIBM Workshops, 2010)

Develop integration modeling approach for discovery neuraminidase inhibitors in silico based on pharmacophore and CoMSIA models. - Kuei-Chung Shih; Chun-Yuan Lin; Jiayi Zhou; Shih-Han Huang; Chuan Yi Tang (BIBM Workshops, 2010)

Balanced Multi-process Parallel Algorithm for Chemical Compound Inference with Given Path Frequencies. - Jiayi Zhou; Kun-Ming Yu; Chun-Yuan Lin; Kuei-Chung Shih; Chuan Yi Tang (ICA3PP (2), 2010)

UNION: An Efficient Mapping Tool Using UniMark with Non-overlapping Interval Indexing Strategy. - Che-Lun Hung; Chun-Yuan Lin; Yu-Chen Hu (FGIT-DTA/BSBT, 2011)

CUDA-FRESCO: Frequency-Based RE-Sequencing Tool Based on CO-clustering Segmentation by GPU. - Chun-Yuan Lin; Chuan Yi Tang; Sheng-Ta Li; Yaw-Ling Lin; Che-Lun Hung (HPCC, 2011)

Multiple genome sequences alignment algorithm based on coding regions. - Che-Lun Hung; Chun-Yuan Lin; Shih-Cheng Chang; Yeh-Ching Chung; Shu Ju Hsieh; Chuan Yi Tang; Yaw-Ling Lin (Int. J. Comput. Biol. Drug Des., 2011)

Development of Novel 3D-QSAR Combination Approach for Screening and Optimizing B-Raf Inhibitors in silico. - Kuei-Chung Shih; Chun-Yuan Lin; Jiayi Zhou; Hsiao-Chieh Chi; Ting-Shou Chen; Chun-Chung Wang; Hsiang-Wen Tseng; Chuan Yi Tang (J. Chem. Inf. Model., 2011)

Cloud service of analyzing virus data: A case study for Norovirus. - Che-Lun Hung; Chun-Yuan Lin (CloudCom, 2012)

Using frequency distance filteration for reducing database search workload on GPU-based cloud service. - Sheng-Ta Lee; Chun-Yuan Lin; Che-Lun Hung; Hsuan Ying Huang (CloudCom, 2012)

GPU-based cloud service for multiple sequence alignments with regular expression constrains. - Yu-Shiang Lin; Chun-Yuan Lin; Yeh-Ching Chung (CloudCom, 2012)

Parallel UPGMA Algorithm on Graphics Processing Units Using CUDA. - Yu-Rong Chen; Che-Lun Hung; Yu-Shiang Lin; Chun-Yuan Lin; Tien-Lin Lee; Kual-Zheng Lee (HPCC-ICESS, 2012)

Efficient Packet Pattern Matching for Gigabit Network Intrusion Detection Using GPUs. - Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang; Chin-Yuan Chang (HPCC-ICESS, 2012)

Parallel Shellsort Algorithm for Many-Core GPUs with CUDA. - Chun-Yuan Lin; Wei Sheng Lee; Chuan Yi Tang (Int. J. Grid High Perform. Comput., 2012)

Design of Novel FLT-3 Inhibitors Based on Dual-Layer 3D-QSAR Model and Fragment-Based Compounds in Silico. - Kuei-Chung Shih; Chun-Yuan Lin; Hsiao-Chieh Chi; Chrong-Shiong Hwang; Ting-Shou Chen; Chuan Yi Tang; Naiwan Hsiao (J. Chem. Inf. Model., 2012)

Preference Utility algorithm using GPGPU architecture. - Che-Lun Hung; Hsiao-Hsi Wang; Jieh-Shan Yeh; Yu-Chen Hu; Chun-Yuan Lin; Yaw-Ling Lin (ICIS, 2013)

Efficient GPU-Based Algorithm for Aligning Huge Sequence Database. - Chun-Yuan Lin; Che-Lun Hung; Jen-Cheng Huang (HPCC/EUC, 2013)

Multiple Sequence Alignments with Regular Expression Constraints on a Cloud Service System. - Yu-Shiang Lin; Chun-Yuan Lin; Hsiao-Chieh Chi; Yeh-Ching Chung (Int. J. Grid High Perform. Comput., 2013)

Efficient parallel algorithm for compound comparisons on multi-GPUs. - Chun-Yuan Lin; Chung-Hung Wang; Che-Lun Hung; Yu-Shiang Lin (BIBM, 2014)

Efficient parallel algorithm for multiple sequence alignments with regular expression constraints on graphics processing units. - Chun-Yuan Lin; Yu-Shiang Lin (Int. J. Comput. Sci. Eng., 2014)

Frequency-based re-sequencing tool for short reads on graphics processing units. - Chun-Yuan Lin; Sheng-Ta Li; Che-Lun Hung (Int. J. Comput. Sci. Eng., 2014)

Development of 3D-QSAR combination approach for discovering and analysing neuraminidase inhibitors in silico. - Chun-Yuan Lin; Hsiao-Chieh Chi; Kuei-Chung Shih; Jiayi Zhou; Naiwan Hsiao; Chuan Yi Tang (Int. J. Data Min. Bioinform., 2014)

An efficient parallel-network packet pattern-matching approach using GPUs. - Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang (J. Syst. Archit., 2014)

Efficient Brain MRI Segmentation Algorithm on TK1. - Che-Lun Hung; Chun-Yuan Lin; Yuan-Huai Wu; Hsiao-Hsi Wang; Yu-Chen Hu (CIT/IUCC/DASC/PICom, 2015)

Efficient Strategies of Compressing Three-Dimensional Sparse Arrays Based on Intel XEON and Intel XEON Phi Environments. - Chun-Yuan Lin; Huang Ting Yen; Che-Lun Hung (CIT/IUCC/DASC/PICom, 2015)

Innovative approach for porting existing CPU program to its CUDA program. - Yu Liu; Yang Hong; Chung-Hung Wang; Sheng-Ta Lee; Chun-Yuan Lin; Che-Lun Hung (BIBM, 2015)

Efficient Parallel Muti-pattern Matching Using GPGPU Acceleration for Packet Filtering. - Che-Lun Hung; Po-Chang Wu; Hsiao-Hsi Wang; Chun-Yuan Lin (HPCC/CSS/ICESS, 2015)

Constructing a Mobility and Acceleration Computing Platform with NVIDIA Jetson TK1. - Min Su; Jianjun Tan; Chun-Yuan Lin; Jin Ye; Chung-Hung Wang; Che-Lun Hung (HPCC/CSS/ICESS, 2015)

CUDA ClustalW: An efficient parallel algorithm for progressive multiple sequence alignment on Multi-GPUs. - Che-Lun Hung; Yu-Shiang Lin; Chun-Yuan Lin; Yeh-Ching Chung; Yi-Fang Chung (Comput. Biol. Chem., 2015)

GPU-UPGMA: high-performance computing for UPGMA algorithm based on graphics processing units. - Yu-Shiang Lin; Chun-Yuan Lin; Che-Lun Hung; Yeh-Ching Chung; Kual-Zheng Lee (Concurr. Comput. Pract. Exp., 2015)

Constructing a Bioinformatics Platform with Web and Mobile Services Based on NVIDIA Jetson TK1. - Chun-Yuan Lin; Jin Ye; Che-Lun Hung; Chung-Hung Wang; Min Su; Jianjun Tan (Int. J. Grid High Perform. Comput., 2015)

High Performance Datafly based Anonymity Algorithm and Its L-Diversity. - Zhi-ting Yu; Quan Qian; Chun-Yuan Lin; Che-Lun Hung (Int. J. Grid High Perform. Comput., 2015)

Efficient parallel UPGMA algorithm based on multiple GPUs. - Che-Lun Hung; Chun-Yuan Lin; Fu-Che Wu; Yu-Wei Chan (BIBM, 2016)

Constructing a GPU cluster platform based on multiple NVIDIA Jetson TK1. - Kuan-Yu Yeh; Hui-Jun Cheng; Jin Ye; Jyh-Da Wei; Chun-Yuan Lin (BIBM, 2016)

Efficient bit-parallel subcircuit extraction using CUDA. - Che-Lun Hung; Chun-Yuan Lin; Chia Shin Ou; Yuan-Hong Tseng; Po-Yen Hung; Shipeng Li; Chun Ting Fu (Concurr. Comput. Pract. Exp., 2016)

Efficient parallelised search engine based on virtual cluster. - Che-Lun Hung; Chun-Yuan Lin (Int. J. Comput. Sci. Eng., 2016)

Embedded multi-core computing and applications. - Che-Lun Hung; Frédéric Magoulès; Meikang Qiu; Robert C. Hsu; Chun-Yuan Lin (J. Supercomput., 2017)

Compressing three-dimensional sparse arrays using inter- and intra-task parallelization strategies on Intel Xeon and Xeon Phi. - Chun-Yuan Lin; Huang Ting Yen; Che-Lun Hung (J. Supercomput., 2017)

An Efficient GPU-Based Multiple Pattern Matching Algorithm for Packet Filtering. - Che-Lun Hung; Chun-Yuan Lin; Po-Chang Wu (J. Signal Process. Syst., 2017)

Using Deep Learning to Identify Cell and Particle in Live-Cell Time-lapse Images. - Hui-Jun Cheng; Chun-Yuan Lin; Cheng-Xian Wu; Che-Lun Hung; Wei-Hsiang Chen; Chuan Yi Tang (BIBM, 2018)

A GPU-based Bit-Parallel Multiple Pattern Matching Algorithm. - Che-Lun Hung; Tzu-Hung Hsu; Hsiao-Hsi Wang; Chun-Yuan Lin (HPCC/SmartCity/DSS, 2018)

Accelerated Parallel Based Distance Calculations for Live-Cell Time-Lapse Images. - Hui-Jun Cheng; Chun-Yuan Lin; Chun-Chien Mao (ICS, 2018)

Improvement of Accuracy of Well-Known Convoluational Neural Networks by Efficient Hybrid Strategy. - Ren-You Yan; Che-Lun Hung; Chun-Yuan Lin; Hsiao-Hsi Wang (I-SPAN, 2018)

qCUDA: GPGPU Virtualization for High Bandwidth Efficiency. - Yu-Shiang Lin; Chun-Yuan Lin; Che-Rung Lee; Yeh-Ching Chung (CloudCom, 2019)

Computing Image Intersection and Union Regions for Drosophila Neurons Based on Multi-core CPUs. - Ming-Yan Guo; Hui-Jun Cheng; Chun-Yuan Lin; Yen-Jen Lin; Ann-Shyn Chiang (I-SPAN, 2019)

GPU-Based Texture Analysis approach for Mammograms Institute of Biomedical Informatics. - Che-Lun Hung; Chun-Yuan Lin (BIBM, 2020)

Detecting Seam-Carved Image by Extreme Learning Machines Using Patch Analysis Method, Jury Voting, and Combinatorial Fusion. - Hui-Jun Cheng; Jyh-Da Wei; Chun-Yuan Lin; Jin Ye (IEEE Trans. Syst. Man Cybern. Syst., 2020)

Platform Construction to Protect Portraits of Others. - Hui-Jun Cheng; Sheng-Fu Zeng; Chun-Yuan Lin (CCCI, 2023)

SAPD: Secure Authentication Protocol Development for Smart Healthcare Management Using IoT. - Mosiur Rahaman; Chun-Yuan Lin; Massoud Moslehpour (GCCE, 2023)

Web Semantic-Based MOOP Algorithm for Facilitating Allocation Problems in the Supply Chain Domain. - Chun-Yuan Lin; Mosiur Rahaman; Massoud Moslehpour; Sourasis Chattopadhyay; Varsha Arya (Int. J. Semantic Web Inf. Syst., 2023)

Exploring Taiwan Monkeypox Virus (MPOX/MPXV) Clade IIb by Establishing Dataset and Clustering by using Sequence and Image Similarity Comparisons. - Tzung-Wei Wang; Ming-Kuang Li; Der-Chyuan Lou; Chun-Yuan Lin (CIIS, 2024)

Privacy-Centric AI and IoT Solutions for Smart Rural Farm Monitoring and Control. - Mosiur Rahaman; Chun-Yuan Lin; Princy Pappachan; Brij B. Gupta; Ching-Hsien Hsu (Sensors, 2024)

Deep learning models for early and accurate diagnosis of ventilator-associated pneumonia in mechanically ventilated neonates. - Jen-Fu Hsu; Ying-Chih Lin; Chun-Yuan Lin; Shih-Ming Chu; Hui-Jun Cheng; Fan-Wei Xu; Hsuan-Rong Huang; Chen-Chu Liao; Rei-Huei Fu; Ming-Horng Tsai (Comput. Biol. Medicine, 2025)