Massively parallel molecular dynamics simulations of lysozyme unfolding. - Ruhong Zhou; Maria Eleftheriou; Chung-Chau Hon; Robert S. Germain; Ajay K. Royyuru; Bruce J. Berne (IBM J. Res. Dev., 2008)

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases. - Marina Lizio; Imad Abugessaisa; Shuhei Noguchi; Atsushi Kondo; Akira Hasegawa; Chung-Chau Hon; Michiel J. L. de Hoon; Jessica Severin; Shinya Oki; Yoshihide Hayashizaki; Piero Carninci; Takeya Kasukawa; et al. (Nucleic Acids Res., 2019)

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. - Imad Abugessaisa; Jordan A. Ramilowski; Marina Lizio; Jesicca Severin; Akira Hasegawa; Jayson Harshbarger; Atsushi Kondo; Shuhei Noguchi; Chi Wai Yip; Jasmine Li Ching Ooi; Michihira Tagami; Fumi Hori; et al. (Nucleic Acids Res., 2021)

SCAFE: a software suite for analysis of transcribed cis-regulatory elements in single cells. - Jonathan Moody; Tsukasa Kouno; Jen-Chien Chang; Yoshinari Ando; Piero Carninci; Jay W. Shin; Chung-Chau Hon (Bioinform., 2022)

Learned morphological features guide cell type assignment of deconvolved spatial transcriptomics. - Eduard Chelebian; Christophe Avenel; Julio León; Chung-Chau Hon; Carolina Wählby (MIDL, 2024)