E2D: A Novel Tool for Annotating Protein Domains in Expressed Sequence Tags. - Guo-Hsing Lee; Nai-Yu Chuang; Wen-Dar Lin; Chung-Der Hsiao; Hahn-Ming Lee; Jan-Ming Ho (CIBCB, 2006)

ZooDDD: a cross-species database for digital differential display analysis. - Yun-Ching Chen; Chung-Der Hsiao; Wen-Dar Lin; Chung-Ming Hu; Pung-Pung Hwang; Jan-Ming Ho (Bioinform., 2006)

GOBU: Toward an Integration Interface for Biological Objects. - Wen-Dar Lin; Yun-Ching Chen; Jan-Ming Ho; Chung-Der Hsiao (J. Inf. Sci. Eng., 2006)

Transcriptome sequencing based annotation and homologous evidence based scaffolding of Anguilla japonica draft genome. - Yu-Chen Liu; Sheng-Da Hsu; Chih-Hung Chou; Wei-Yun Huang; Yu-Hung Chen; Chia-Yu Liu; Guan-Jay Lyu; Shao-Zhen Huang; Sergey Aganezov Jr.; Max A. Alekseyev; Chung-Der Hsiao; Hsien-Da Huang (BMC Genom., 2016)

The aquatic animals' transcriptome resource for comparative functional analysis. - Chih-Hung Chou; Hsi-Yuan Huang; Wei-Chih Huang 002; Sheng-Da Hsu; Chung-Der Hsiao; Chia-Yu Liu; Yu-Hung Chen; Yu-Chen Liu; Wei-Yun Huang; Meng-Lin Lee; Yi-Chang Chen; Hsien-Da Huang (BMC Genom., 2018)