A hierarchical, building-block-based computational scheme for protein structure prediction. - Chung-Jung Tsai; Buyong Ma; Yuk Yin Sham; Sandeep Kumar; Haim J. Wolfson; Ruth Nussinov (IBM J. Res. Dev., 2001)

Designing a Nanotube Using Naturally Occurring Protein Building Blocks. - Chung-Jung Tsai; Jie Zheng 003; Ruth Nussinov (PLoS Comput. Biol., 2006)

A Unified View of "How Allostery Works". - Chung-Jung Tsai; Ruth Nussinov (PLoS Comput. Biol., 2014)

Structural host-microbiota interaction networks. - Emine Guven-Maiorov; Chung-Jung Tsai; Ruth Nussinov (PLoS Comput. Biol., 2017)

Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. - Ruth Nussinov; Hyunbum Jang; Chung-Jung Tsai; Feixiong Cheng (PLoS Comput. Biol., 2019)

Correction: Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. - Ruth Nussinov; Hyunbum Jang; Chung-Jung Tsai; Feixiong Cheng (PLoS Comput. Biol., 2019)

Protein ensembles link genotype to phenotype. - Ruth Nussinov; Chung-Jung Tsai; Hyunbum Jang (PLoS Comput. Biol., 2019)

SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. - Damla Ovek; Ameer Taweel; Zeynep Abali; Ece Tezsezen; Yunus Emre Koroglu; Chung-Jung Tsai; Ruth Nussinov; Ozlem Keskin; Attila Gürsoy (Bioinform., 2022)

HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. - Hansaim Lim; Chung-Jung Tsai; Ozlem Keskin; Ruth Nussinov; Attila Gürsoy (Bioinform., 2022)