hp-DPI: Helicobacter pylori Database of Protein Interactomes-embracing experimental and inferred interactions. - Chung-Yen Lin; Chia-Ling Chen; Chi-Shiang Cho; Li-Ming Wang; Chia-Ming Chang; Pao-Yang Chen; Chen-Zen Lo; Chao A. Hsiung (Bioinform., 2005)

POWER: PhylOgenetic WEb Repeater - an integrated and user-optimized framework for biomolecular phylogenetic analysis. - Chung-Yen Lin; Fan-Kai Lin; Chieh Hua Lin; Li-Wei Lai; Hsiu-Jun Hsu; Shu-Hwa Chen; Chao A. Hsiung (Nucleic Acids Res., 2005)

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology. - Chung-Yen Lin; Shu-Hwa Chen; Chi-Shiang Cho; Chia-Ling Chen; Fan-Kai Lin; Chieh Hua Lin; Pao-Yang Chen; Chen-Zen Lo; Chao A. Hsiung (BMC Bioinform., 2006)

Reconstruction of human protein interolog network using evolutionary conserved network. - Tao-Wei Huang; Chung-Yen Lin; Cheng-Yan Kao (BMC Bioinform., 2007)

The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays. - Shu-Hwa Chen; Chen-Zen Lo; Ming-Chi Tsai; Chao A. Hsiung; Chung-Yen Lin (BMC Bioinform., 2008)

Hubba: hub objects analyzer - a framework of interactome hubs identification for network biology. - Chung-Yen Lin; Chia-Hao Chin; Hsin-Hung Wu; Shu-Hwa Chen; Chin-Wen Ho; Ming-Tat Ko (Nucleic Acids Res., 2008)

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles. - Chia-Hao Chin; Shu-Hwa Chen; Chin-Wen Ho; Ming-Tat Ko; Chung-Yen Lin (BMC Bioinform., 2010)

Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray. - Chin-I Chang; Pei-Hsin Hung; Chia-Che Wu; Ta Chih Cheng; Jyh-Ming Tsai; King-Jung Lin; Chung-Yen Lin (Sensors, 2012)

Visual tracking with sensing dynamics compensation using the Expectation-Maximization algorithm. - Chung-Yen Lin; Cong Wang 015; Masayoshi Tomizuka (ACC, 2013)

Pose estimation in industrial machine vision systems under sensing dynamics: A statistical learning approach. - Chung-Yen Lin; Cong Wang 015; Masayoshi Tomizuka (ICRA, 2014)

Design of kinematic controller for real-time vision guided robot manipulators. - Cong Wang 015; Chung-Yen Lin; Masayoshi Tomizuka (ICRA, 2014)

Fast planning of well conditioned trajectories for model learning. - Cong Wang 015; Yu Zhao 015; Chung-Yen Lin; Masayoshi Tomizuka (IROS, 2014)

cytoHubba: identifying hub objects and sub-networks from complex interactome. - Chia-Hao Chin; Shu-Hwa Chen; Hsin-Hung Wu; Chin-Wen Ho; Ming-Tat Ko; Chung-Yen Lin (BMC Syst. Biol., 2014)

Robust principal component analysis for iterative learning control of precision motion systems with non-repetitive disturbances. - Chung-Yen Lin; Liting Sun; Masayoshi Tomizuka (ACC, 2015)

Matrix factorization for design of Q-filter in iterative learning control. - Chung-Yen Lin; Liting Sun; Masayoshi Tomizuka (CDC, 2015)

Approximate nonlinear model predictive control of a gasoline engine with EGR. - Raechel Tan; Chung-Yen Lin; Masayoshi Tomizuka (ECC, 2015)

Path-constrained trajectory planning for robot service life optimization. - Chung-Yen Lin; Yu Zhao 015; Masayoshi Tomizuka; Wenjie Chen (ACC, 2016)

Learning control for task specific industrial robots. - Chung-Yen Lin; Wenjie Chen; Masayoshi Tomizuka (CDC, 2016)

Convex feasible set algorithm for constrained trajectory smoothing. - Changliu Liu; Chung-Yen Lin; Yizhou Wang 003; Masayoshi Tomizuka (ACC, 2017)

CloudEC: A MapReduce-based algorithm for correcting errors in next-generation sequencing big data. - Wei-Chun Chung; Jan-Ming Ho; Chung-Yen Lin; D. T. Lee (IEEE BigData, 2017)

A gene profiling deconvolution approach to estimating immune cell composition from complex tissues. - Shu-Hwa Chen; Wen-Yu Kuo; Sheng-Yao Su; Wei-Chun Chung; Jen-Ming Ho; Henry Horng-Shing Lu; Chung-Yen Lin (BMC Bioinform., 2018)

The Convex Feasible Set Algorithm for Real Time Optimization in Motion Planning. - Changliu Liu; Chung-Yen Lin; Masayoshi Tomizuka (SIAM J. Control. Optim., 2018)

MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification. - Chun-Chieh Liao; Po-Ying Fu; Chih-Wei Huang; Chia-Hsien Chuang; Yun Yen; Chung-Yen Lin; Shu-Hwa Chen (Bioinform., 2022)

A SSN reduction technique for single-ended I/O, parallel link system. - Hung-Wen Lin; Chung-Yen Lin; Tzu-Yu Teng; Chi-Ting Ke (ICCE-Taiwan, 2023)